# Hemizygous loss of helicases promotes genomic instability and cancer development

**Authors:** Karolin Voßgröne, Francesco Favero, Krushanka Kashyap, Francisco G. Rodríguez-González, André V. Olsen, Xin Li, Balca R. Mardin, Joachim Weischenfeldt, Claus S. Sørensen

PMC · DOI: 10.1126/sciadv.adv4540 · Science Advances · 2026-02-20

## TL;DR

Losing one copy of helicase genes weakens DNA repair, leading to genomic instability and increased cancer risk.

## Contribution

This study identifies helicase gene mutations, particularly hemizygous loss of AQR, as a common and early driver of cancer development.

## Key findings

- Helicases are the most commonly mutated enzyme family in two-thirds of cancers.
- Hemizygous loss of AQR is an early clonal event linked to genomic instability and homologous recombination deficiency.
- Hemizygous loss of helicases is a tumor suppression mechanism present in 35% of cancers.

## Abstract

Cancer mutations perturb key processes, driving uncontrolled cell proliferation. With critical roles of enzymes in cell function and growth, we hypothesized that cancer driver mutations alter specific and recurrent enzymatic functions. Leveraging large pan-cancer genomic datasets and curated mutation catalogs, we identified frequent mutations in helicases, enzymes involved in nucleic acid unwinding and processing. Helicases emerged as the most commonly mutated cancer driver enzyme family, altered in two-thirds of all cancers. Functional screens and genomic analyses revealed that helicase dysfunctions contribute to genomic instability and faulty DNA repair. We observed a marked phenotype of Aquarius helicase (AQR), which was recurrently hemizygously deleted as an early clonal event in cancer genomes. These deletions were associated with high genomic instability and homologous recombination deficiency signatures. Furthermore, we found hemizygous loss to be a common tumor suppression mechanism among helicases, present in 35% of all cancers. Overall, our enzyme-family approach highlights helicases, including AQR, as key potential cancer drivers.

Losing one copy of helicase genes reduces genome protection, leading to DNA damage and higher risk of cancer development.

## Linked entities

- **Genes:** AQR (aquarius intron-binding spliceosomal factor) [NCBI Gene 9716]

## Full-text entities

- **Genes:** HFM1 (helicase for meiosis 1) [NCBI Gene 164045] {aka MER3, POF9, SEC63D1, Si-11, Si-11-6, helicase}, DHX8 (DEAH-box helicase 8) [NCBI Gene 1659] {aka DDX8, Dhr2, HRH1, PRP22, PRPF22}, HSD17B6 (hydroxysteroid 17-beta dehydrogenase 6) [NCBI Gene 8630] {aka HSE, RODH, SDR9C6}, ERBB2 (erb-b2 receptor tyrosine kinase 2) [NCBI Gene 2064] {aka CD340, HER-2, HER-2/neu, HER2, MLN 19, MLN-19}, PAX2 (paired box 2) [NCBI Gene 5076] {aka FSGS7, PAPRS, PAX-2}, RNASEH1 (ribonuclease H1) [NCBI Gene 246243] {aka H1RNA, PEOB2, RNH1}, EGF (epidermal growth factor) [NCBI Gene 1950] {aka HOMG4, URG}, ATR (ATR checkpoint kinase) [NCBI Gene 545] {aka FCTCS, FRP1, MEC1, SCKL, SCKL1}, DROSHA (drosha ribonuclease III) [NCBI Gene 29102] {aka ETOHI2, HSA242976, RANSE3L, RN3, RNASE3L, RNASEN}, ATP8B1 (ATPase phospholipid transporting 8B1) [NCBI Gene 5205] {aka ATPIC, BRIC, FIC1, ICP1, PFIC, PFIC1}, HELZ2 (helicase with zinc finger 2) [NCBI Gene 85441] {aka PDIP-1, PRIC285}, PTEN (phosphatase and tensin homolog) [NCBI Gene 5728] {aka 10q23del, BZS, CWS1, DEC, GLM2, MHAM}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, SMAD4 (SMAD family member 4) [NCBI Gene 4089] {aka DPC4, JIP, MADH4, MYHRS}, ERCC2 (ERCC excision repair 2, TFIIH core complex helicase subunit) [NCBI Gene 2068] {aka COFS2, CXPD, EM9, TFIIH, TTD, TTD1}, RNASE1 (ribonuclease A family member 1, pancreatic) [NCBI Gene 6035] {aka RAC1, RIB1, RNS1}, ATRX (ATRX chromatin remodeler) [NCBI Gene 546] {aka JMS, MRX52, RAD54, RAD54L, XH2, XNP}, PARP1 (poly(ADP-ribose) polymerase 1) [NCBI Gene 142] {aka ADPRT, ADPRT 1, ADPRT1, ARTD1, PARP, PARP-1}, BLM (BLM RecQ like helicase) [NCBI Gene 641] {aka BS, MGRISCE1, RECQ2, RECQL2, RECQL3}, RAD51 (RAD51 recombinase) [NCBI Gene 5888] {aka BRCC5, FANCR, HRAD51, HsRad51, HsT16930, MRMV2}, DICER1 (dicer 1, ribonuclease III) [NCBI Gene 23405] {aka DCR1, Dicer, Dicer1e, GLOW, HERNA, K12H4.8-LIKE}, INS (insulin) [NCBI Gene 3630] {aka IDDM, IDDM1, IDDM2, ILPR, IRDN, MODY10}, BRCA2 (BRCA2 DNA repair associated) [NCBI Gene 675] {aka BRCC2, BROVCA2, FACD, FAD, FAD1, FANCD}, AQR (aquarius intron-binding spliceosomal factor) [NCBI Gene 9716] {aka IBP160, fSAP164}, SMARCA4 (SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4) [NCBI Gene 6597] {aka BAF190, BAF190A, BRG1, CSS4, MRD16, OTSC12}, POLQ (DNA polymerase theta) [NCBI Gene 10721] {aka PRO0327}, FAN1 (FANCD2 and FANCI associated nuclease 1) [NCBI Gene 22909] {aka KIAA1018, KMIN, MTMR15, hFAN1}, BRCA1 (BRCA1 DNA repair associated) [NCBI Gene 672] {aka BRCAI, BRCC1, BROVCA1, FANCS, IRIS, PNCA4}, CDKN1B (cyclin dependent kinase inhibitor 1B) [NCBI Gene 1027] {aka CDKN4, KIP1, MEN1B, MEN4, P27KIP1}, CHD3 (chromodomain helicase DNA binding protein 3) [NCBI Gene 1107] {aka Mi-2a, Mi2-ALPHA, SNIBCPS, ZFH}, NF1 (neurofibromin 1) [NCBI Gene 4763] {aka NFNS, VRNF, WSS}, pDR [NCBI Gene 5171], CHEK1 (checkpoint kinase 1) [NCBI Gene 1111] {aka CHK1, OZEMA21}, RECQL4 (RecQ like helicase 4) [NCBI Gene 9401] {aka RECQ4}, SETX (senataxin) [NCBI Gene 23064] {aka ALS4, AOA2, SCAN2, SCAR1, STEX, Sen1}, DHX38 (DEAH-box helicase 38) [NCBI Gene 9785] {aka DDX38, PRP16, PRPF16, RP84}, SLX4 (SLX4 structure-specific endonuclease subunit) [NCBI Gene 84464] {aka BTBD12, FANCP, MUS312}, WEE1 (WEE1 G2 checkpoint kinase) [NCBI Gene 7465] {aka WEE1A, WEE1hu}, FANCM (FA complementation group M) [NCBI Gene 57697] {aka FAAP250, KIAA1596, POF15, SPGF28}, ALB (albumin) [NCBI Gene 213] {aka FDAHT, HSA, PRO0883, PRO0903, PRO1341}
- **Diseases:** WT (MESH:D006969), COAD (MESH:D029424), HRD (MESH:C535296), Lung adenocarcinoma (MESH:D000077192), skin cancer (MESH:D012878), Colorectal adenocarcinoma (MESH:D003110), Lung squamous cell carcinoma (MESH:D002294), Pancreatic adenocarcinoma (MESH:D010190), Melanoma (MESH:D008545), osteosarcoma (MESH:D012516), Rectum adenocarcinoma (MESH:D012004), Head and neck carcinoma (MESH:D006258), Esophageal adenocarcinoma (MESH:D000230), C class enzyme tumors (MESH:D009369), Low-grade glioma (MESH:D008228), Ovarian carcinoma (MESH:D010051), Thymoma (MESH:D013945), Breast carcinoma (MESH:D001943), Bladder carcinoma (MESH:D001749), Kidney clear cell carcinoma (MESH:D002292), Liver Hepatocellular Carcinoma (MESH:D006528), Thyroid Cancer (MESH:D013964), TSGs (OMIM:601308), toxicity (MESH:D064420), LoF (MESH:D006315)
- **Chemicals:** NaF (MESH:D012969), EtOH (MESH:D000431), 5-ethynyl -2'-deoxyuridine (MESH:C031086), isopropanol (MESH:D019840), SDS (MESH:D012967), methanol (MESH:D000432), Dox (MESH:D004318), leupeptin (MESH:C032854), streptomycin (MESH:D013307), Triton X-100 (MESH:D017830), hydrocortisone (MESH:D006854), EDTA (MESH:D004492), aphidicolin (MESH:D016590), agarose (MESH:D012685), polybrene (MESH:D006583), formaldehyde (MESH:D005557), talazoparib (MESH:C586365), DMSO (MESH:D004121), 4',6-diamidino-2-phenylindole (MESH:C007293), Nutlin3a (MESH:C482205), penicillin (MESH:D010406), puromycin (MESH:D011691), DRB (MESH:D004004), Crystal Violet (MESH:D005840), I1882-100MG (-), PI (MESH:D011419), Alexa Fluor 488 (MESH:C000711379), beta-glycerophosphate (MESH:C031463), Lipofectamine (MESH:C086724)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** A 102C
- **Cell lines:** 15140-130 — Homo sapiens (Human), Transformed cell line (CVCL_5W12), U-2 OS — Homo sapiens (Human), Osteosarcoma, Cancer cell line (CVCL_0042), D1916-10MG — Homo sapiens (Human), Down syndrome, Finite cell line (CVCL_9I01), HEK — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_M624), S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), 293T — Homo sapiens (Human), Transformed cell line (CVCL_0063), MCF10A — Homo sapiens (Human), Spontaneously immortalized cell line (CVCL_0598), H9268 — Rattus norvegicus (Rat), Adenocarcinoma of the rat prostate, Cancer cell line (CVCL_Y658), MCF10A iCas9 — Homo sapiens (Human), Embryonic stem cell (CVCL_WS14)

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12922743/full.md

## References

58 references — full list in the complete paper: https://tomesphere.com/paper/PMC12922743/full.md

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Source: https://tomesphere.com/paper/PMC12922743