# Cross-Species Analysis of ABA-Induced Phosphosignaling Landscapes in Rice, Soybean, and Arabidopsis

**Authors:** Hinano Takase, Sotaro Katagiri, Takuma Ide, Aina Nagano, Haruki Sakurai, Hana Kokubo, Taiki Yanagisawa, Masanori Okamoto, Taishi Umezawa

PMC · DOI: 10.3390/proteomes14010004 · Proteomes · 2026-01-20

## TL;DR

This study compares how abscisic acid affects protein phosphorylation in three plant species, revealing both shared and unique signaling patterns.

## Contribution

The study provides the first cross-species phosphoproteomic comparison of ABA signaling in Arabidopsis, rice, and soybean.

## Key findings

- ABA treatments identified thousands of phosphopeptides in each species.
- Comparative analysis revealed conserved and species-specific ABA-responsive phosphoproteins.
- Findings suggest evolutionary diversification in ABA signaling pathways.

## Abstract

Background: Abscisic acid (ABA) is a key phytohormone that regulates plant growth and stress responses through protein phosphorylation. While ABA-induced phosphosignaling has been extensively studied in Arabidopsis thaliana, its conservation and divergence across plant species remain unclear. Methods: Here, we performed phosphoproteomic analysis using LC-MS/MS in Arabidopsis, rice (Oryza sativa), and soybean (Glycine max) to compare ABA-responsive phosphorylation profiles among monocots, dicots, and legumes. Results: ABA treatments on Arabidopsis, rice, and soybean seedlings yielded approximately 24,604, 18,865, and 24,930 phosphopeptides, respectively. Comparative analyses revealed both conserved and species-specific ABA-responsive phosphoproteins. Conclusions: This work provides insights into the evolutionary diversification of ABA signaling and its potential applications in improving crop stress tolerance.

## Linked entities

- **Chemicals:** abscisic acid (PubChem CID 30583)
- **Species:** Arabidopsis thaliana (taxon 3702), Oryza sativa (taxon 4530), Glycine max (taxon 3847)

## Full-text entities

- **Genes:** PRIN2 (Serine/Threonine-kinase) [NCBI Gene 837593] {aka PLASTID REDOX INSENSITIVE 2}, SNRK2.3 (sucrose nonfermenting 1(SNF1)-related protein kinase 2.3) [NCBI Gene 836822] {aka SNRK2-3, SRK2I, SUCROSE NONFERMENTING 1 (SNF1)-RELATED PROTEIN KINASE 2-3, sucrose nonfermenting 1(SNF1)-related protein kinase 2.3}, GRF4 (growth-regulating factor 4) [NCBI Gene 824457] {aka AtGRF4, growth-regulating factor 4}, MPK2 (mitogen-activated protein kinase homolog 2) [NCBI Gene 842248] {aka ATMPK2, MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2, T30E16.13, T30E16_13, mitogen-activated protein kinase homolog 2}, TPR3 (Tetratricopeptide repeat (TPR)-like superfamily protein) [NCBI Gene 839442] {aka F20D22.4, F20D22_4, tetratricopeptide repeat 3}, bZIP (basic leucine-zipper 8) [NCBI Gene 843221] {aka AtbZIP, T6L1.5, basic leucine-zipper 8}, TPL (Transducin family protein / WD-40 repeat family protein) [NCBI Gene 838144] {aka F7H2.9, F7H2_9, TOPLESS, WSIP1, WUS-INTERACTING PROTEIN 1}, AREB3 (ABA-responsive element binding protein 3) [NCBI Gene 824852] {aka ABA-responsive element binding protein 3, DPBF3}, ABF2 (abscisic acid responsive elements-binding factor 2) [NCBI Gene 841095] {aka ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, AREB1, ATAREB1, AtABF2, abscisic acid responsive elements-binding factor 2}, OST1 (Protein kinase superfamily protein) [NCBI Gene 829541] {aka ATOST1, F17I5.140, F17I5_140, OPEN STOMATA 1, P44, SNF1-RELATED PROTEIN KINASE 2.6}, SNRK2.2 (SNF1-related protein kinase 2.2) [NCBI Gene 824214] {aka PROTEIN KINASE, SNF1-RELATED PROTEIN KINASE 2-2, SNF1-related protein kinase 2.2, SNRK2-2, SPK-2-2, SRK2D}, DREB1A (dehydration response element B1A) [NCBI Gene 828652] {aka ATCBF3, C-REPEAT BINDING FACTOR  3, C-REPEAT BINDING FACTOR 3, CBF3, T30C3.3, TRANSCRIPTIONAL ACTIVATOR CBF3}, ABI5 (Basic-leucine zipper (bZIP) transcription factor family protein) [NCBI Gene 818199] {aka ABA INSENSITIVE 5, AtABI5, F2H17.12, F2H17_12, GIA1, GROWTH-INSENSITIVITY TO ABA 1}, RAB18 (RAB GTPASE HOMOLOG B18) [NCBI Gene 840987] {aka ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, ATRAB-C1, ATRAB18, ATRABC1, F28H19.15}, MPK12 (mitogen-activated protein kinase 12) [NCBI Gene 819215] {aka ATMPK12, MAPK12, T3F17.28, mitogen-activated protein kinase 12}
- **Diseases:** injury to (MESH:D014947)
- **Chemicals:** auxin (MESH:D007210), Thr (MESH:D013912), guanidine hydrochloride (MESH:D019791), SLS (MESH:D012967), DTT (MESH:D004229), KOH (MESH:C029943), NaF (MESH:D012969), cysteine (MESH:D003545), sucrose (MESH:D013395), chloroform (MESH:D002725), hydroxy acid (MESH:D006880), peptide (MESH:D010455), water (MESH:D014867), Tyr (MESH:D014443), pentose-phosphate (MESH:D010428), TritonX-100 (MESH:D017830), Ser (MESH:D012694), ammonium bicarbonate (MESH:C027043), ACN (MESH:C032159), EDTA (MESH:D004492), beta-glycerophosphate (MESH:C031463), HEPES (MESH:D006531), glycerol (MESH:D005990), salt (MESH:D012492), FA (MESH:C030544), NaCl (MESH:D012965), methanol (MESH:D000432), Proline (MESH:D011392), ABA (MESH:D000040), Phosphopeptide (MESH:D010748), Ca2+ (-), MgCl2 (MESH:D015636), pT (MESH:D010984), sodium bicarbonate (MESH:D017693), methionine (MESH:D008715)
- **Species:** Bryophyta (mosses, clade) [taxon 3208], Chara braunii (species) [taxon 69332], Selaginella moellendorffii (species) [taxon 88036], eudicotyledons (eudicots, clade) [taxon 71240], Oryza sativa (Asian cultivated rice, species) [taxon 4530], PX clade (clade) [taxon 569578], Populus (poplar, genus) [taxon 3689], Homo sapiens (human, species) [taxon 9606], Physcomitrium patens (species) [taxon 3218], Zea mays (maize, species) [taxon 4577], Chlamydomonas (genus) [taxon 3052], Marchantia polymorpha (common liverwort, species) [taxon 3197], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Glycine max (soybean, species) [taxon 3847], Solanum lycopersicum (tomato, species) [taxon 4081]

## Full text

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## Figures

10 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12922155/full.md

## References

48 references — full list in the complete paper: https://tomesphere.com/paper/PMC12922155/full.md

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Source: https://tomesphere.com/paper/PMC12922155