# Plant-Derived Hydrolysates Are a Suitable Replacement for Tryptone N1 in Recombinant Protein Expression Using Human Embryonic Kidney (HEK293-6E) Cells

**Authors:** Shafqat Shabir, Md. Shahadat Hossain, Lucie Egly, Gizem Yalkin, Franco H. Falcone

PMC · DOI: 10.3390/biotech15010014 · BioTech · 2026-02-05

## TL;DR

This study shows that plant-based hydrolysates can replace animal-derived Tryptone N1 in HEK293 cells for producing recombinant proteins, offering a sustainable alternative.

## Contribution

The novelty is demonstrating that plant-derived hydrolysates from pea and broad bean are viable and sustainable alternatives to animal-derived Tryptone N1 for recombinant protein expression.

## Key findings

- Plant-derived hydrolysates from pea and broad bean showed similar cell viability as Tryptone N1.
- All three hydrolysates (pea, broad bean, and TN1) produced comparable recombinant protein expression levels.
- Plant-based hydrolysates outperformed the no-hydrolysate control in both viability and protein expression.

## Abstract

Human embryonic kidney (HEK293) cells are a widespread choice for recombinant protein expression. To optimise yields, the hydrolysate Tryptone N1 (TN1) is commonly added post-transfection. TN1 is obtained by controlled enzymatic digestion of casein. As an animal by-product, TN1 faces stricter regulations during cross-country shipments than plant-based products. This raises the question of whether plant-derived peptides are a suitable alternative to TN1. Using polyethyleneimine (PEI) as a cationic polymer, we transfected HEK293-6E cells grown in suspension in serum-free medium and divided the transfectants into four groups (each in triplicate). Two plant-based hydrolysates each derived from pea and broad bean were compared with TN1 and a no-hydrolysate control group. We monitored the cultures for total cell numbers and viability at days 1, 4, and 5 post-transfection. Both plant-based hydrolysates and TN1 showed similar live cell percentages, in contrast to the no-hydrolysate control, which showed lower viability. Five days post-transfection, the expressed His-tagged protein, a tegumental antigen from the eukaryotic parasite Echinococcus granulosus, was retrieved from the serum-free culture supernatant, and the expressed recombinant protein was quantified. The linear ranges for the protein load on the stain-free blot and for the use of the fluorescent anti-His-Tag Alexa488 antibody were determined. Using these parameters, stain-free Western blotting and total protein normalization were performed. The plant-derived pea and broad bean hydrolysates reproducibly resulted in similar expression levels as animal-derived TN1; all three hydrolysates were better than no hydrolysate. We conclude that plant-derived hydrolysates are a suitable, more sustainable replacement for TN1.

## Linked entities

- **Species:** Echinococcus granulosus (taxon 6210)

## Full-text entities

- **Genes:** SLC15A1 (solute carrier family 15 member 1) [NCBI Gene 6564] {aka HPECT1, HPEPT1, PEPT1}, SLC15A2 (solute carrier family 15 member 2) [NCBI Gene 6565] {aka PEPT2}
- **Diseases:** Toxicity (MESH:D064420), hypothermia (MESH:D007035), injury to (MESH:D014947)
- **Chemicals:** dimethyl sulfoxide (MESH:D004121), glucose (MESH:D005947), sodium acetate (MESH:D019346), PVDF (MESH:C024865), polyamidoamine (MESH:C531249), sodium butyrate (MESH:D020148), CO2 (MESH:D002245), Trichloroacetic Acid (MESH:D014238), Valproic acid (MESH:D014635), acetone (MESH:D000096), amino acid (MESH:D000596), F-120 (-), SDS (MESH:D012967), peptides (MESH:D010455), casamino acid (MESH:C017721), TCA (MESH:D014233), nitrogen (MESH:D009584), His (MESH:D006639), PEI (MESH:D011094), oligopeptides (MESH:D009842), methanol (MESH:D000432), Trypan Blue (MESH:D014343)
- **Species:** Bos taurus (bovine, species) [taxon 9913], Vicia faba (broad bean, species) [taxon 3906], Homo sapiens (human, species) [taxon 9606], Echinococcus granulosus (species) [taxon 6210], Powellomyces sp. EA (species) [taxon 252690], Mycoplasma (genus) [taxon 2093], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932]
- **Cell lines:** HEK293-6E — Homo sapiens (Human), Transformed cell line (CVCL_HF20), HEK — Homo sapiens (Human), Transformed cell line (CVCL_0045), BHK-21 — Mesocricetus auratus (Golden hamster), Spontaneously immortalized cell line (CVCL_RQ70), CHO — Cricetulus griseus (Chinese hamster), Spontaneously immortalized cell line (CVCL_0213)

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12922121/full.md

## References

36 references — full list in the complete paper: https://tomesphere.com/paper/PMC12922121/full.md

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Source: https://tomesphere.com/paper/PMC12922121