# Bridging the Gap Between Static Histology and Dynamic Organ-on-a-Chip Models

**Authors:** Zheyi Wang, Keiji Naruse, Ken Takahashi

PMC · DOI: 10.3390/pathophysiology33010010 · Pathophysiology · 2026-01-21

## TL;DR

This paper reviews how Organ-on-a-Chip technology can bridge the gap between static tissue analysis and dynamic disease modeling, enabling better understanding and personalized treatment.

## Contribution

The paper introduces a new classification strategy for Organ-on-a-Chip models based on pathological mechanisms rather than organ type.

## Key findings

- Organ-on-a-Chip models can dynamically simulate disease processes like inflammation and fibrosis.
- More than 100 OOC disease models across multiple organs have been developed.
- New Pathophysiology integrates OOC, multi-omics, and AI to enable real-time disease tracking.

## Abstract

For more than a century, pathology has served as a cornerstone of modern medicine, relying primarily on static microscopic assessment of tissue morphology—such as H&E staining—which remains the “gold standard” for disease diagnosis. However, this conventional paradigm provides only a snapshot of disease states and often fails to capture their dynamic evolution and complex functional mechanisms. Moreover, animal models are constrained by marked interspecies differences, creating a persistent gap in translational research. To overcome these limitations, we propose the concept of New Pathophysiology, a research framework that transcends purely morphological descriptions and aims to resolve functional dynamics in real time. This approach integrates Organ-on-a-Chip (OOC) technology, multi-omics analyses, and artificial intelligence to reconstruct the entire course of disease initiation and to enable personalized medicine. In this review, we first outline the foundations and limitations of traditional pathology and animal models. We then systematically summarize more than one hundred existing OOC disease models across multiple organs—including the kidney, liver, and brain. Finally, we elaborate on how OOC technologies are reshaping the study of key pathological processes such as inflammation, metabolic dysregulation, and fibrosis by converting them into dynamic, mechanistic disease models, and we propose future perspectives in the field. This review adopts a relatively uncommon classification strategy based on pathological mechanisms (mechanism-based), rather than organ-based categorization, allowing readers to recognize shared principles underlying different diseases. Moreover, the focus of this work is not on emphasizing iteration or replacement of existing approaches, but on preserving past achievements from a historical perspective, with an emphasis on overcoming current limitations and enabling new advances.

## Full-text entities

- **Genes:** Ifng (interferon gamma) [NCBI Gene 15978] {aka IFN-g, If2f, Ifg}, PRKAB1 (protein kinase AMP-activated non-catalytic subunit beta 1) [NCBI Gene 5564] {aka AMPK, HAMPKb}, ACTA1 (actin alpha 1, skeletal muscle) [NCBI Gene 58] {aka ACTA, ASMA, CFTD, CFTD1, CFTDM, CMYO2A}, CXCL8 (C-X-C motif chemokine ligand 8) [NCBI Gene 3576] {aka GCP-1, GCP1, IL8, LECT, LUCT, LYNAP}, Fgf2 (fibroblast growth factor 2) [NCBI Gene 14173] {aka Fgf-2, Fgf2a, Fgfb, bFGF}, YAP1 (Yes1 associated transcriptional regulator) [NCBI Gene 10413] {aka COB1, YAP, YAP-1, YAP2, YAP65, YKI}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, NPPB (natriuretic peptide B) [NCBI Gene 4879] {aka BNP, Iso-ANP}, VIM (vimentin) [NCBI Gene 7431], IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, REST (RE1 silencing transcription factor) [NCBI Gene 5978] {aka DFNA27, GINGF5, HGF5, NRSF, WT6, XBR}, INS (insulin) [NCBI Gene 3630] {aka IDDM, IDDM1, IDDM2, ILPR, IRDN, MODY10}, TAFAZZIN (tafazzin, phospholipid-lysophospholipid transacylase) [NCBI Gene 6901] {aka BTHS, CMD3A, EFE, EFE2, G4.5, LVNCX}, DES (desmin) [NCBI Gene 1674] {aka CDCD3, CSM1, CSM2, LGMD1D, LGMD1E, LGMD2R}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, CDH5 (cadherin 5) [NCBI Gene 1003] {aka 7B4, CD144}, MAFB (MAF bZIP transcription factor B) [NCBI Gene 9935] {aka DURS3, KRML, MCTO}, CRP (C-reactive protein) [NCBI Gene 1401] {aka PTX1}, Tgfb1 (transforming growth factor, beta 1) [NCBI Gene 21803] {aka TGF-beta1, TGFbeta1, Tgfb, Tgfb-1}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, PBX1 (PBX homeobox 1) [NCBI Gene 5087] {aka CAKUHED}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, ALB (albumin) [NCBI Gene 213] {aka FDAHT, HSA, PRO0883, PRO0903, PRO1341}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, GCGR (glucagon receptor) [NCBI Gene 2642] {aka GGR, GL-R, MVAH}
- **Diseases:** cachexia (MESH:D002100), immune-mediated diseases (MESH:C567355), pneumonia (MESH:D011014), bone fibrosis (MESH:D055728), adenomyosis (MESH:D062788), hepatic steatosis (MESH:D005234), left ventricular dysfunction (MESH:D018487), NOD (MESH:D009765), hemorrhages (MESH:D006470), organ failure (MESH:D009102), autoimmune disease (MESH:D001327), damage (MESH:D020263), non- (MESH:C580335), burns (MESH:D002056), TOF (MESH:D013771), genetic disorders (MESH:D030342), osteoarthritis (MESH:D010003), metabolic disorders (MESH:D008659), metabolic dysregulation (MESH:D021081), ischemia (MESH:D007511), cervical cancer (MESH:D002583), Coronary Microvascular Dysfunction (MESH:D003327), COP (MESH:D018549), dysplasia (MESH:D015792), pap (MESH:C535787), inflammation (MESH:D007249), liver diseases (MESH:D008107), fibrotic disease (MESH:D004194), injury (MESH:D014947), Fibrosis (MESH:D005355), cystic fibrosis (MESH:D003550), liver fibrosis (MESH:D008103), chronic myeloid leukemia (MESH:D015464), intraepithelial neoplasia (MESH:D002578), atrophy (MESH:D001284), lung injury (MESH:D055370), neuroinflammation (MESH:D000090862), lung cancer (MESH:D008175), inflammatory syndromes (MESH:D018746), SPM (MESH:C567481), cancer (MESH:D009369), DM (MESH:D003920), SPMs (MESH:D012678), Interstitial Lung Disease (MESH:D017563), arteriolosclerosis (MESH:D050379), Aplastic anemia (MESH:D000741), DILI (MESH:D056486), mycobacterium tuberculosis (MESH:D014376), cardiac (MESH:D006331), liver injury (MESH:D017093), Pulmonary fibrosis (MESH:D011658), Type 1 Diabetes (MESH:D003922), Lowe syndrome (MESH:D009800), bacterial (MESH:D001424), T2D (MESH:D003924), amyloidosis (MESH:D000686), IBD (MESH:D015212), kidney tubulopathy (MESH:D007674), breast tumor (MESH:D001943), OOC (MESH:D000092124)
- **Chemicals:** cholesterol (MESH:D002784), FITC-dextran (MESH:C015219), bleomycin (MESH:D001761), oxygen (MESH:D010100), methionine (MESH:D008715), CCl4 (MESH:D002251), Iopamidol (MESH:D007479), FITC (MESH:D016650), choline (MESH:D002794), lipid (MESH:D008055), LPS (MESH:D008070), fructose (MESH:D005632), glucose (MESH:D005947), Periodic Acid (MESH:D010504), SCFAs (MESH:D005232), Eosin (MESH:D004801), Hematoxylin (MESH:D006416), BioRender (-), Prednisolone (MESH:D011239), H&amp;E (MESH:D006371), lipoxin (MESH:D044045), Congo Red (MESH:D003224), Pirfenidone (MESH:C093844), butyrate (MESH:D002087), asbestos (MESH:D001194), Picrosirius Red (MESH:C009798)
- **Species:** Sus scrofa (pig, species) [taxon 9823], Canis lupus familiaris (dog, subspecies) [taxon 9615], Mus musculus (house mouse, species) [taxon 10090], Oryctolagus cuniculus (domestic rabbit, species) [taxon 9986], Rodentia (rodent, order) [taxon 9989], Homo sapiens (human, species) [taxon 9606], Felis catus (cat, species) [taxon 9685], Rattus norvegicus (brown rat, species) [taxon 10116], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395]
- **Cell lines:** U937 — Homo sapiens (Human), Adult acute monocytic leukemia, Cancer cell line (CVCL_0007), C57BL/6J — Mus musculus (Mouse), Transformed cell line (CVCL_C0MW)

## Full text

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## Figures

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## References

208 references — full list in the complete paper: https://tomesphere.com/paper/PMC12922035/full.md

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Source: https://tomesphere.com/paper/PMC12922035