# CRPPA exon 6–9 deletion as a founder mutation in Chinese patients with dystroglycanopathy

**Authors:** Jihang Luo, Yidan Liu, Danyu Song, Shiqi Yang, Xiaona Fu, Lin Ge, Cuijie Wei, Liya Cui, Yanbin Fan, Huaxia Luo, Yanwei He, Jin Xu, Qiang Shen, Yuxuan Guo, Motoi Kanagawa, Tatsushi Toda, Jingmin Wang, Hong Zhang, Hui Xiong

PMC · DOI: 10.1002/ped4.70029 · Pediatric Investigation · 2025-11-30

## TL;DR

A study finds a common genetic mutation in Chinese patients with dystroglycanopathy, helping improve diagnosis and genetic counseling.

## Contribution

The study identifies a founder mutation (CRPPA exon 6–9 deletion) in Chinese dystroglycanopathy patients and expands the known phenotypic spectrum.

## Key findings

- A recurrent exon 6–9 deletion in CRPPA was found in 25% of Chinese dystroglycanopathy patients.
- Phenotypes ranged from severe muscle-eye-brain disease to milder limb-girdle muscular dystrophy.
- Haplotype analysis confirmed the deletion as a founder mutation in this population.

## Abstract

Dystroglycanopathies (DGPs) are a group of muscular dystrophies with abnormal glycosylation of dystroglycan. CRPPA is a gene associated with DGPs. Understanding the genetic basis, genotype–phenotype correlations, and population‐specific mutations is crucial for accurate diagnosis and genetic counseling.

To investigate CRPPA mutations in Chinese pediatric patients with DGPs, analyze genotype–phenotype correlations, and determine whether specific deletions represent founder mutations in this population.

Clinical and genetic data of pediatric patients with CRPPA‐related DGPs between June 2006 and December 2023 from Peking University First Hospital were collected and analyzed. Muscle biopsy specimens from four patients were examined using immunohistochemistry, immunofluorescence, and electron microscopy. Haplotype analysis was performed to investigate the potential founder mutation.

Among the 16 patients studied, phenotypes ranged from severe muscle‐eye‐brain disease to milder limb‐girdle muscular dystrophy. Twenty‐one pathogenic variants were identified, including five novel variants. A recurrent exon 6–9 deletion emerged as the second most frequent variant (25.0%, 4/16), with haplotype analysis supporting a founder mutation in Chinese patients. At follow‐up, most patients remained non‐ambulatory, and one patient died of respiratory failure.

This study broadens the CRPPA mutational spectrum and identifies a founder mutation of exon 6–9 deletion in Chinese patients. These findings have important implications for population‐specific screening, diagnosis, and genetic counseling.

Analysis of sixteen Chinese dystroglycanopathy patients reveals a founder mutation (CRPPA exon 6–9 deletion) in 25% of cases and expands the phenotypic spectrum from severe muscle‐eye‐brain disease to limb‐girdle muscular dystrophy.

## Linked entities

- **Genes:** CRPPA (CDP-L-ribitol pyrophosphorylase A) [NCBI Gene 729920]
- **Diseases:** dystroglycanopathy (MONDO:0018282), muscle-eye-brain disease (MONDO:0018939), limb-girdle muscular dystrophy (MONDO:0016971)

## Full-text entities

- **Genes:** LAMA2 (laminin subunit alpha 2) [NCBI Gene 3908] {aka LAMM, MDC1A}, DMD (dystrophin) [NCBI Gene 1756] {aka BMD, CMD3B, DXS142, DXS164, DXS206, DXS230}, CRPPA (CDP-L-ribitol pyrophosphorylase A) [NCBI Gene 729920] {aka ISPD, LGMDR20, MDDGA7, MDDGC7, Nip, hISPD}, DAG1 (dystroglycan 1) [NCBI Gene 1605] {aka 156DAG, A3a, AGRNR, DAG, LGMDR16, MDDGA9}, POMT1 (protein O-mannosyltransferase 1) [NCBI Gene 10585] {aka LGMD2K, LGMDR11, MDDGA1, MDDGB1, MDDGC1, RT}, GMPPB (GDP-mannose pyrophosphorylase B) [NCBI Gene 29925] {aka LGMDR19, MDDGA14, MDDGB14, MDDGC14}, B3GALNT2 (beta-1,3-N-acetylgalactosaminyltransferase 2) [NCBI Gene 148789] {aka B3GalNAc-T2, MDDGA11}, FKTN (fukutin) [NCBI Gene 2218] {aka CMD1X, FCMD, LGMD2M, LGMDR13, MDDGA4, MDDGB4}, POMGNT2 (protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)) [NCBI Gene 84892] {aka AGO61, C3orf39, GTDC2, MDDGA8, MDDGC8}, CMPK1 (cytidine/uridine monophosphate kinase 1) [NCBI Gene 51727] {aka CK, CMK, CMPK, UMK, UMP-CMPK, UMPK}, POMT2 (protein O-mannosyltransferase 2) [NCBI Gene 29954] {aka LGMD2N, LGMDR14, MDDGA2, MDDGB2, MDDGC2}, POMGNT1 (protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)) [NCBI Gene 55624] {aka GNTI.2, GnT I.2, LGMD2O, LGMDR15, MEB, MGAT1.2}, FKRP (fukutin related protein) [NCBI Gene 79147] {aka FKTR, LGMD2I, LGMDR9, MDC1C, MDDGA5, MDDGB5}
- **Diseases:** MEB (MESH:D058494), Mitochondrial dysfunction (MESH:D028361), optic nerve atrophy (MESH:D009896), cerebellar tonsillar malformation (MESH:D014067), respiratory complications (MESH:D012140), Morphological abnormalities of (MESH:D000013), pulmonary infection (MESH:D012141), fatty (MESH:D008067), swelling (MESH:D004487), atrophic and hypertrophic fibers (MESH:D020966), muscle weakness (MESH:D018908), CMD-MR (MESH:C538190), mitochondrial failure (MESH:D051437), ocular abnormalities (MESH:D005124), strabismus (MESH:D013285), cerebellar microcysts (MESH:D000236), LGMD (MESH:D049288), cerebellar and brainstem hypoplasia (MESH:C562568), respiratory failure (MESH:D012131), Cerebellar and brainstem abnormalities (MESH:D002526), Duchenne muscular dystrophy (MESH:D020388), autosomal recessive disorders (MESH:D030342), brain abnormalities (MESH:D001927), MR (MESH:D008607), deficient (MESH:D007153), epileptic seizures (MESH:D004827), hypotonia (MESH:D009123), brainstem dysplasia (MESH:D020295), cardiac involvement (MESH:D006331), muscle fiber necrosis (MESH:D009135), calcium (MESH:D002128), cerebellar cyst (MESH:D003560), MDC1A (MESH:C537384), brain malformations (MESH:D020785), necrosis (MESH:D009336), malformations (MESH:C564254), CMD (MESH:D009136)
- **Chemicals:** nitrogen (MESH:D009584), glycan (MESH:D011134), CTP (MESH:D003570), Hematoxylin (MESH:D006416), CDP-ribitol (MESH:C100069), CRPPA (-), isopentane (MESH:C067038), Alexa Fluor 488 (MESH:C000711379), ribitol 5-phosphate (MESH:C041025), calcium (MESH:D002118), DAPI (MESH:C007293), eosin (MESH:D004801), glutaraldehyde (MESH:D005976)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** p.His114Asp, c.340C>G, rs34460874, c.1251G>A, c.452T>C, rs1373698562, 505A>T, rs1357073749, p.Val374_Gln417del, 49664G>A, rs6947755, c.790-12T>C, rs868837227, c.659A>T, 1186G>T, c.1026+1G>A, c.1124A>G, 13687T>A, c. 1114-1116del, 10845A>G, c.464A>G, c.790-24T>C, 724C>T, 990delC, c.457A>T, c.5A>T, 34470A>G, 16638C>G, rs6965612, 608insT, 12T>C, rs765283, 850G>T, rs13245556, 24826C>G, c.712A>G, c.789+2T>G, c.1114_1116delGTT, 13685T>A

## Full text

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## Figures

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## References

40 references — full list in the complete paper: https://tomesphere.com/paper/PMC12921627/full.md

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Source: https://tomesphere.com/paper/PMC12921627