# Alterations in gut microbiota and plasma metabolites in pulmonary arterial hypertension secondary to congenital left-to-right shunt heart disease: potential mechanisms and biomarkers

**Authors:** Diwen Li, Tianli Zhao, Xueyang Gong, Yiliya Ahemaiti, Luyao Wei, Yuyang Huang, Shijun Hu

PMC · DOI: 10.3389/fgene.2026.1699787 · Frontiers in Genetics · 2026-02-06

## TL;DR

This study explores how changes in gut bacteria and blood metabolites are linked to a severe heart condition, offering potential new biomarkers and treatment targets.

## Contribution

The study identifies novel microbial-metabolic interactions and potential biomarkers specific to PAH secondary to congenital heart disease.

## Key findings

- CL-RSHD + PAH patients showed distinct gut microbiota shifts, including increased Lachnoclostridium phocaeense and reduced Anaerostipes.
- Metabolomics revealed dysregulated steroid biosynthesis and oxidative stress pathways, with key metabolites correlating with PAH severity.
- Strong microbiota-metabolite interactions, such as Lactonifactor-D-E1IG3P, suggest a disrupted vascular remodeling axis.

## Abstract

Pulmonary arterial hypertension (PAH) secondary to congenital left-to-right shunt heart disease (CL-RSHD) is a life-threatening complication with unclear microbial and metabolic mechanisms. This study investigated gut microbiota and plasma metabolic alterations in CL-RSHD-associated PAH to identify biomarkers and mechanistic pathways.

This cross-sectional study included 86 participants: healthy controls (HC, n = 13), CL-RSHD (n = 46), and CL-RSHD + PAH (n = 27). Gut microbiota was analyzed using 16S rRNA gene sequencing of the V3–V4 region on 41 fecal samples (HC, n = 9; CL-RSHD, n = 15; and CL-RSHD + PAH, n = 17). Untargeted plasma metabolomics was analyzed on all 86 plasma samples. Microbial diversity, differential taxa (DESeq2), metabolic pathways (OPLS-DA, KEGG), and biomarker potential (ROC curves) were assessed. Dynamic correlations linked microbiota-metabolite interactions.

CL-RSHD + PAH patients showed preserved α/β-diversity but distinct taxonomic shifts: enriched Lachnoclostridium phocaeense (Firmicutes) and reduced SCFA-producing Anaerostipes. Metabolomics revealed dysregulated steroid biosynthesis, cortisol metabolism, and oxidative stress pathways. Key metabolites, including elevated 5-hydroxymethylcytidine (5-hmC) and γ-L-glutamyl-L-cysteine, and reduced histidine intermediate D-E1IG3P, correlated with PAH severity. Strong microbiota-metabolite interactions (e.g., Lactonifactor-D-E1IG3P, r = 0.82, P < 0.01) suggested a disrupted vascular remodeling axis. Metabolites like ADP-glucose (AUC = 0.94) and 3-phenylpropyl glucosinolate (AUC = 0.92) showed high diagnostic accuracy.

CL-RSHD-associated PAH involves gut microbial restructuring and metabolic reprogramming linked to immune-inflammatory activation and oxidative stress. The Firmicutes-histidine metabolism axis emerges as a therapeutic target. Despite limitations, this study provides foundational insights into microbial-metabolic drivers of PAH, highlighting novel biomarkers for early diagnosis and intervention.

## Linked entities

- **Chemicals:** 5-hydroxymethylcytidine (PubChem CID 14367004), γ-L-glutamyl-L-cysteine (PubChem CID 123938), ADP-glucose (PubChem CID 16500), 3-phenylpropyl glucosinolate (PubChem CID 131752368)
- **Diseases:** pulmonary arterial hypertension (MONDO:0015924)

## Full-text entities

- **Genes:** GPT (glutamic--pyruvic transaminase) [NCBI Gene 2875] {aka AAT1, ALT, ALT1, GPT1, SGPT}, MYOCD (myocardin) [NCBI Gene 93649] {aka MGBL, MYCD}, IL18 (interleukin 18) [NCBI Gene 3606] {aka IGIF, IL-18, IL-1g, IL1F4}, PAH (phenylalanine hydroxylase) [NCBI Gene 5053] {aka PH, PKU, PKU1}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, Pah (phenylalanine hydroxylase) [NCBI Gene 24616], DNMT1 (DNA methyltransferase 1) [NCBI Gene 1786] {aka ADCADN, AIM, CXXC9, DNMT, HSN1E, MCMT}, CRP (C-reactive protein) [NCBI Gene 1401] {aka PTX1}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, Hpgds (hematopoietic prostaglandin D synthase) [NCBI Gene 58962] {aka Ptgds2}, NFE2L2 (NFE2 like bZIP transcription factor 2) [NCBI Gene 4780] {aka IMDDHH, NRF2, Nrf-2}
- **Diseases:** hypoxemic (MESH:D012131), ventricular dilation (MESH:C566255), left-to (MESH:D018487), hypoxic (MESH:D002534), organ dysfunction (MESH:D009102), diarrhea (MESH:D003967), metabolic (MESH:D008659), left-to-right shunt heart disease (MESH:C562451), Cushing syndrome (MESH:D003480), chronic thromboembolic PAH (MESH:D011655), Hypoxia (MESH:D000860), Inflammatory (MESH:D007249), atrial septal defect (MESH:D006344), injury (MESH:D014947), cirrhosis (MESH:D005355), HC (MESH:D000067329), Respiratory Diseases (MESH:D012140), congenital malformation (OMIM:163000), insomnia (MESH:D007319), cancer (MESH:D009369), pulmonary vascular disease (MESH:D014652), diabetes (MESH:D003920), ASD (MESH:D001321), barrier (MESH:C536830), biventricular dysfunction (MESH:D018754), type 2 diabetes (MESH:D003924), irritable bowel syndrome (MESH:D043183), infectious endocarditis (MESH:D004696), ventriculap septal defect (MESH:D006343), inflammatory bowel disease (MESH:D015212), heart failure (MESH:D006333), VSD (MESH:D004310), constipation (MESH:D003248), heart disease (MESH:D006331), systemic (MESH:D015619), immune dysregulation (OMIM:614878), chronic (MESH:D002908), right (MESH:C535682), hypertension (MESH:D006973), CL (MESH:D002971), PAH (MESH:D000081029), cardiovascular diseases (MESH:D002318), right ventricular enlargement (MESH:D018497), peritonitis (MESH:D010538), gastrointestinal diseases (MESH:D005767), PDA (MESH:D004374), vascular dysfunction (MESH:D002561), CHD (MESH:D006330)
- **Chemicals:** imidazole (MESH:C029899), cytosine (MESH:D003596), 5-mC (MESH:D044503), glutamate (MESH:D018698), glucosinolate (MESH:D005961), isothiocyanates (MESH:D017879), dipeptide (MESH:D004151), Pyrimidine (MESH:C030986), pyruvate (MESH:D019289), histamine (MESH:D006632), TMAO (MESH:C005855), oxygen (MESH:D010100), Histidine (MESH:D006639), Cortisol (MESH:D006854), EDTA (MESH:D004492), sulforaphane (MESH:C016766), carbon (MESH:D002244), 5-Hydroxymethylcytidine (MESH:C000629395), Steroid (MESH:D013256), carbon dioxide (MESH:D002245), GSH (MESH:D005978), sucrose (MESH:D013395), cysteine (MESH:D003545), Lipid (MESH:D008055), agarose (MESH:D012685), ADP-glucose (MESH:D000245), acetate (MESH:D000085), alcohol (MESH:D000438), creatinine (MESH:D003404), ROS (MESH:D017382), SCFA (MESH:D005232), PO2 (MESH:C093415), 3-Phenylpropyl glucosinolate (-), gamma-Glu-Cys (MESH:C017341), butyrate (MESH:D002087), Cr (MESH:D002857), fatty acid (MESH:D005227), carbohydrate (MESH:D002241)
- **Species:** Rothia aeria (species) [taxon 172042], Parabacteroides chongii (species) [taxon 2685834], Lachnoclostridium phocaeense (species) [taxon 1871021], Anaerostipes hadrus (species) [taxon 649756], Prevotella amnii (species) [taxon 419005], Methanobacteriota (euryarchaeotes, phylum) [taxon 28890], Planctomycetota (phylum) [taxon 203682], Neisseria perflava (species) [taxon 33053], Mus musculus (house mouse, species) [taxon 10090], Clostridium celatum (species) [taxon 36834], Alloprevotella tannerae (species) [taxon 76122], Lactonifactor (genus) [taxon 420345], Bacillota (clostridial firmicutes, phylum) [taxon 1239], Spirochaetota (phylum) [taxon 203691], Barnesiella viscericola (species) [taxon 397865], Anaerostipes (genus) [taxon 207244], Fibrobacterota (phylum) [taxon 65842], gut metagenome (species) [taxon 749906], Armatimonadota (phylum) [taxon 67819], Candidatus Hydrogenedentota (phylum) [taxon 142187], Candidatus Babelota (clade) [taxon 95901], Rattus norvegicus (brown rat, species) [taxon 10116], Homo sapiens (human, species) [taxon 9606]

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## Figures

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## References

51 references — full list in the complete paper: https://tomesphere.com/paper/PMC12921412/full.md

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Source: https://tomesphere.com/paper/PMC12921412