# The DNA methylation landscape of naturally short-lived killifish

**Authors:** Mara Steiger, Nishita Singh, Alexandra M. Tyers, Helene Kretzmer, Dario Riccardo Valenzano, Alexander Meissner

PMC · DOI: 10.1038/s41598-026-39352-3 · Scientific Reports · 2026-02-19

## TL;DR

This study maps DNA methylation in short-lived killifish, revealing age-related and tissue-specific changes that could help understand aging in vertebrates.

## Contribution

The first whole-genome methylation maps for two killifish species, highlighting their potential as a model for aging research.

## Key findings

- Age-related DNA methylation dynamics were identified in killifish.
- Tissue-specific methylation patterns were observed across the genome.
- Killifish are validated as a model for studying vertebrate aging.

## Abstract

Annual killifish of the genus Nothobranchius are naturally short-lived vertebrates that exhibit a wide range of aging characteristics typically observed in mammals. Here, we provide the first comprehensive whole-genome methylation map for two species, revealing local age-related as well as tissue-specific dynamics in the DNA methylome. Our maps and results support the annual killifish as a model organism and further highlight its value for studying aging including possible health status predictions in vertebrates.

The online version contains supplementary material available at 10.1038/s41598-026-39352-3.

## Linked entities

- **Species:** Nothobranchius (taxon 28779)

## Full-text entities

- **Genes:** gata3 [NCBI Gene 107387225], LGR5 (leucine rich repeat containing G protein-coupled receptor 5) [NCBI Gene 8549] {aka FEX, GPR49, GPR67, GRP49, HG38}, neurod1 [NCBI Gene 107389695], ncam1 [NCBI Gene 107380103]
- **Diseases:** TE (MESH:C565217), neoplasias (MESH:D009369), neurodegeneration (MESH:D019636), overdose (MESH:D062787), anesthetic (MESH:C536883)
- **Chemicals:** ethanol (MESH:D000431), nitrogen (MESH:D009584), Bisulfite (MESH:C042345), MS222 (MESH:C003636), 5mC (-)
- **Species:** C. elegans [taxon 328850], Nothobranchius (genus) [taxon 28779], Galeopterus variegatus (Malayan flying lemur, species) [taxon 482537], Mus musculus (house mouse, species) [taxon 10090], Suncus etruscus (white-toothed pygmy shrew, species) [taxon 109475], Nothobranchius furzeri (turquoise killifish, species) [taxon 105023], Nothobranchius orthonotus (spotted killifish, species) [taxon 451741], Fundulus heteroclitus (Atlantic killifish, species) [taxon 8078], Homo sapiens (human, species) [taxon 9606], teleost fish (species) [taxon 70862], Danio rerio (leopard danio, species) [taxon 7955]
- **Cell lines:** N. furzeri — Homo sapiens (Human), Finite cell line (CVCL_UZ57)

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12921331/full.md

## References

2 references — full list in the complete paper: https://tomesphere.com/paper/PMC12921331/full.md

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Source: https://tomesphere.com/paper/PMC12921331