# Shaping death: how the microbiome regulates tumour cell demise and therapy response

**Authors:** Martina Raudenska, Jan Balvan, Eliska Zgarbova, David Kalfert, Jan Plzak, Michal Masarik

PMC · DOI: 10.1007/s10555-026-10318-1 · Cancer Metastasis Reviews · 2026-02-20

## TL;DR

This paper explores how the microbiome influences cancer cell death and therapy response, highlighting a bidirectional relationship with potential for precision cancer treatments.

## Contribution

The paper provides a comprehensive review of the interplay between the microbiome and cancer cell death pathways, emphasizing key metabolic mediators.

## Key findings

- The microbiome modulates cancer cell death pathways and therapy responses through microbial metabolites.
- Cell death reshapes the microbiome by altering nutrients and immune signals.
- Understanding this crosstalk could lead to microbiome-informed cancer therapies.

## Abstract

Cell death is a fundamental process that maintains tissue homeostasis and shapes the tumour microenvironment. Cancer cells often evade or reprogram cell death pathways, which leads to malignancy and therapy resistance. On the other hand, the cell death of non-malignant cells significantly influences the adverse effects of anticancer therapy, such as the onset of mucositis or enteritis. Emerging evidence identifies both the tumour and gut microbiomes as critical modulators of these processes. In turn, cell death reshapes the microbial ecosystem by altering nutrient landscapes and immune signalling. Although both cell death and the microbiome are well-studied in cancer, their intersection remains underexplored. This review article addresses this gap by summarising how microbes and microbial metabolites modulate cancer cell death pathways and shape responses to anticancer therapy. We integrated current knowledge on this complex interplay, focusing on key metabolic mediators that can influence cell fate decisions. Understanding this bidirectional crosstalk offers new opportunities to “preserve the good and eliminate the bad” within the tumour–microbiome axis, paving the way for precision microbiome-informed cancer therapies.

## Linked entities

- **Diseases:** malignancy (MONDO:0004992), mucositis (MONDO:0020579), enteritis (MONDO:0043579), cancer (MONDO:0004992)

## Full-text entities

- **Genes:** IRF1 (interferon regulatory factor 1) [NCBI Gene 3659] {aka IMD117, IRF-1, MAR}, BNIP3 (BCL2 interacting protein 3) [NCBI Gene 664] {aka HABON, NIP3}, NMNAT1 (nicotinamide nucleotide adenylyltransferase 1) [NCBI Gene 64802] {aka LCA9, NMNAT, PNAT1, SHILCA}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, TFEB (transcription factor EB) [NCBI Gene 7942] {aka ALPHATFEB, BHLHE35, TCFEB}, ATG101 (autophagy related 101) [NCBI Gene 60673] {aka C12orf44}, MUL1 (mitochondrial E3 ubiquitin protein ligase 1) [NCBI Gene 79594] {aka C1orf166, GIDE, MAPL, MULAN, RNF218}, IDO1 (indoleamine 2,3-dioxygenase 1) [NCBI Gene 3620] {aka IDO, IDO-1, INDO}, ACSS1 (acyl-CoA synthetase short chain family member 1) [NCBI Gene 84532] {aka ACAS2L, ACECS1, AceCS2L}, TET1 (tet methylcytosine dioxygenase 1) [NCBI Gene 80312] {aka CXXC6, LCX, bA119F7.1}, Naprt (nicotinate phosphoribosyltransferase) [NCBI Gene 223646] {aka 9130210N20Rik, Naprt1}, FUNDC1 (FUN14 domain containing 1) [NCBI Gene 139341], NAPRT (nicotinate phosphoribosyltransferase) [NCBI Gene 93100] {aka NAPRT1, PP3856}, STAT1 (signal transducer and activator of transcription 1) [NCBI Gene 6772] {aka CANDF7, IMD31A, IMD31B, IMD31C, ISGF-3, STAT91}, RET (ret proto-oncogene) [NCBI Gene 5979] {aka CDHF12, CDHR16, HSCR1, MEN2A, MEN2B, MTC1}, SIRT1 (sirtuin 1) [NCBI Gene 23411] {aka SIR2, SIR2L1, SIR2alpha}, Hcar2 (hydroxycarboxylic acid receptor 2) [NCBI Gene 80885] {aka Gpr109a, Gpr109b, HM74, Niacr1, PUMA-G, Pumag}, TDO2 (tryptophan 2,3-dioxygenase) [NCBI Gene 6999] {aka HYPTRP, TDO, TO, TPH2, TRPO}, CYP4F3 (cytochrome P450 family 4 subfamily F member 3) [NCBI Gene 4051] {aka CPF3, CYP4F, CYPIVF3, LTB4H}, FASLG (Fas ligand) [NCBI Gene 356] {aka ALPS1B, APT1LG1, APTL, CD178, CD95-L, CD95L}, TNFSF10 (TNF superfamily member 10) [NCBI Gene 8743] {aka APO2L, Apo-2L, CD253, TANCR, TL2, TNLG6A}, RB1CC1 (RB1 inducible coiled-coil 1) [NCBI Gene 9821] {aka ATG17, CC1, FIP200, PPP1R131}, KDR (kinase insert domain receptor) [NCBI Gene 3791] {aka CD309, FLK1, VEGFR, VEGFR2}, HAAO (3-hydroxyanthranilate 3,4-dioxygenase) [NCBI Gene 23498] {aka 3-HAO, HAO, VCRL1, h3HAO}, PARP1 (poly(ADP-ribose) polymerase 1) [NCBI Gene 142] {aka ADPRT, ADPRT 1, ADPRT1, ARTD1, PARP, PARP-1}, OPTN (optineurin) [NCBI Gene 10133] {aka ALS12, FIP2, GLC1E, HIP7, HYPL, NRP}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, ATG12 (autophagy related 12) [NCBI Gene 9140] {aka APG12, APG12L, FBR93, HAPG12}, PDK1 (pyruvate dehydrogenase kinase 1) [NCBI Gene 5163], PRKN (parkin RBR E3 ubiquitin protein ligase) [NCBI Gene 5071] {aka AR-JP, LPRS2, PARK2, PDJ}, BNIP3L (BCL2 interacting protein 3 like) [NCBI Gene 665] {aka BNIP3a, NIP3L, NIX}, APAF1 (apoptotic peptidase activating factor 1) [NCBI Gene 317] {aka APAF-1, CED4}, MDM2 (MDM2 proto-oncogene) [NCBI Gene 4193] {aka ACTFS, HDMX, LSKB, hdm2}, XIAP (X-linked inhibitor of apoptosis) [NCBI Gene 331] {aka API3, BIRC4, IAP-3, ILP1, MIHA, XLP2}, APC (APC regulator of Wnt signaling pathway) [NCBI Gene 324] {aka BTPS2, DESMD, DP2, DP2.5, DP3, GS}, PIK3C3 (phosphatidylinositol 3-kinase catalytic subunit type 3) [NCBI Gene 5289] {aka VPS34, Vps34, hVps34}, BAK1 (BCL2 antagonist/killer 1) [NCBI Gene 578] {aka BAK, BAK-LIKE, BCL2L7, CDN1}, ODC1 (ornithine decarboxylase 1) [NCBI Gene 4953] {aka BABS, NEDBA, NEDBIA, ODC}, BIK (BCL2 interacting killer) [NCBI Gene 638] {aka BIP1, BP4, NBK}, PINK1 (PTEN induced kinase 1) [NCBI Gene 65018] {aka BRPK, PARK6}, ATG7 (autophagy related 7) [NCBI Gene 10533] {aka APG7-LIKE, APG7L, GSA7, SCAR31}, SMOX (spermine oxidase) [NCBI Gene 54498] {aka C20orf16, PAO, PAO-1, PAO1, PAOH, PAOH1}, BECN1 (beclin 1) [NCBI Gene 8678] {aka ATG6, VPS30, beclin1}, GABARAPL2 (GABA type A receptor associated protein like 2) [NCBI Gene 11345] {aka ATG8, ATG8C, GATE-16, GATE16, GEF-2, GEF2}, NADSYN1 (NAD synthetase 1) [NCBI Gene 55191] {aka VCRL3}, ATG5 (autophagy related 5) [NCBI Gene 9474] {aka APG5, APG5-LIKE, APG5L, ASP, SCAR25, hAPG5}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, SQSTM1 (sequestosome 1) [NCBI Gene 8878] {aka A170, DMRV, EBIAP, FTDALS3, NADGP, OSIL}, PAOX (polyamine oxidase) [NCBI Gene 196743] {aka PAO}, GPX4 (glutathione peroxidase 4) [NCBI Gene 2879] {aka GPx-4, GSHPx-4, MCSP, PHGPx, SMDS, snGPx}, LPCAT3 (lysophosphatidylcholine acyltransferase 3) [NCBI Gene 10162] {aka C3F, LPCAT, LPLAT 5, LPLAT12, LPSAT, MBOAT5}, ATG13 (autophagy related 13) [NCBI Gene 9776] {aka KIAA0652, PARATARG8}, BCL2L11 (BCL2 like 11) [NCBI Gene 10018] {aka BAM, BIM, BOD}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, QPRT (quinolinate phosphoribosyltransferase) [NCBI Gene 23475] {aka HEL-S-90n, QPRTase}, ZBP1 (Z-DNA binding protein 1) [NCBI Gene 81030] {aka C20orf183, DAI, DLM-1, DLM1}, ACACA (acetyl-CoA carboxylase alpha) [NCBI Gene 31] {aka ACAC, ACACAD, ACACalpha, ACC, ACC1, ACCA}, H3P16 (H3 histone pseudogene 16) [NCBI Gene 644914] {aka H3.6, H3F3AP6, p21}, FASN (fatty acid synthase) [NCBI Gene 2194] {aka FAS, OA-519, SDR27X1}, ATG14 (autophagy related 14) [NCBI Gene 22863] {aka ATG14L, BARKOR, KIAA0831}
- **Diseases:** autoimmune attacks (MESH:D001327), gastric adenocarcinoma (MESH:D013274), Lung adenocarcinoma (MESH:D000077192), obese (MESH:D009765), Hypoxic (MESH:D002534), microbial infections (MESH:D015163), NETs (MESH:C536657), oral cancer (MESH:D009062), skin carcinogenesis (MESH:D063646), PTC (MESH:D000077273), blood cancers (MESH:D019337), hypoxia (MESH:D000860), OSCC (MESH:D000077195), prostate cancer (MESH:D011471), melanoma (MESH:D008545), glioma (MESH:D005910), metabolic disturbances (MESH:D024821), inflammation (MESH:D007249), mitochondrial damage (MESH:D028361), colon and pancreatic cancer (MESH:D010190), mammary (MESH:D005348), cervical cancer (MESH:D002583), dysbiosis (MESH:D064806), carcinoma in situ (MESH:D002278), Tumours (MESH:D009369), lung cancer (MESH:D008175), neuroinflammation (MESH:D000090862), colorectal, lung, head and neck, and skin cancers (MESH:D006258), B-cell non-Hodgkin lymphoma (MESH:D016393), lymph node metastasis (MESH:D008207), breast and colon cancer (MESH:D001943), mucositis (MESH:D052016), depression (MESH:D003866), enteritis (MESH:D004751), M. hyorhinis infection (MESH:C566367), lymphoma (MESH:D008223), acute radiation syndrome (MESH:D054508), ovarian cancer (MESH:D010051), granulomas (MESH:D006099), necrosis (MESH:D009336), pheochromocytoma (MESH:D010673), intestinal damage (MESH:D007410), septic shock (MESH:D012772), hepatocellular carcinoma (MESH:D006528), OSCC tumours (MESH:D018307), prostate carcinoma (MESH:D011472), papillary tumours (MESH:D002291), colonic adenomas (MESH:D003108), bladder cancer (MESH:D001749), ulcerative colitis (MESH:D003093), rheumatoid arthritis (MESH:D001172), breast, prostate, gastric cancer, and bladder cancer (MESH:C537243), ischemia reperfusion injury (MESH:D015427), lung metastasis (MESH:D009362), spermatogenic dysfunction (MESH:C564030), colon cancer (MESH:D015179), Streptococcus mutans infection (MESH:D011008), endometrial cancer (MESH:D016889), neutrophil (MESH:C564275), thrombocytopenia (MESH:D013921)
- **Chemicals:** 6-hydroxyindole (MESH:C571206), cardiolipin (MESH:D002308), metformin (MESH:D008687), NAM (MESH:D009536), indole-3-pyruvic acid (MESH:C008122), phospholipids (MESH:D010743), ellagitannins (MESH:D047348), 5-fluorouracil (MESH:D005472), spermine (MESH:D013096), isoprenoids (MESH:D013729), indoles (MESH:D007211), acetyl-CoA (MESH:D000105), nucleotides (MESH:D009711), Iron (MESH:D007501), PI3P (MESH:C055525), Sorafenib (MESH:D000077157), adenine (MESH:D000225), copper (MESH:D003300), Kynurenine (MESH:D007737), bafilomycin A1 (MESH:C040929), acetic acid (MESH:D019342), glucosinolates (MESH:D005961), glutamate (MESH:D018698), propylamine (MESH:D011437), silver (MESH:D012834), I3C (MESH:C016517), galactose (MESH:D005690), 5-methylthioadenosine (MESH:C008500), aldehydes (MESH:D000447), pentanoate (MESH:D014631), quinolinic acid (MESH:D017378), NO (MESH:D009569), cholesterol (MESH:D002784), asparagine (MESH:D001216), tinidazole (MESH:D014011), shikonin (MESH:C016101), gold (MESH:D006046), IDA (MESH:C001446), DCA (MESH:D003840), L-methionine (MESH:D008715), pyruvate (MESH:D019289), IP6 (MESH:D010833), Succinate (MESH:D019802), doxycycline (MESH:D004318), oxygen (MESH:D010100), sulphate (MESH:D013431), Ammonia (MESH:D000641), Formate (MESH:C030544), enterobactin (MESH:D004758), hexoses (MESH:D006601), capsiate (MESH:C470213), nitrogen (MESH:D009584), polysaccharides (MESH:D011134), L-lactate (MESH:D019344), KYNA (MESH:D007736), 5-fluorocytosine (MESH:D005437), pectin (MESH:D010368), lipid hydroperoxides (MESH:D008054), carbon (MESH:D002244), tigecycline (MESH:D000078304)
- **Species:** Desulfovibrio (genus) [taxon 872], Enterococcus faecalis (species) [taxon 1351], Salmonella enterica (species) [taxon 28901], Veillonella parvula (species) [taxon 29466], Campylobacter jejuni (species) [taxon 197], Parabacteroides distasonis (species) [taxon 823], Hominimerdicola alba (species) [taxon 1264], Streptococcus pyogenes (species) [taxon 1314], Enterobacter (genus) [taxon 547], Acinetobacter baylyi (species) [taxon 202950], Bacteroides thetaiotaomicron (species) [taxon 818], Clostridia (class) [taxon 186801], Corynebacterium durum (species) [taxon 61592], Salmonella enterica subsp. enterica serovar Typhimurium (no rank) [taxon 90371], Shigella flexneri (species) [taxon 623], Chlamydia trachomatis (species) [taxon 813], Leuconostoc lactis (species) [taxon 1246], Candida albicans (species) [taxon 5476], Cutibacterium acnes (species) [taxon 1747], Subdoligranulum variabile (species) [taxon 214851], Streptococcus mutans (species) [taxon 1309], Mesomycoplasma hyorhinis (species) [taxon 2100], Ligilactobacillus murinus (species) [taxon 1622], Peptostreptococcus anaerobius (species) [taxon 1261], Escherichia coli (E. coli, species) [taxon 562], Bacillus sp. CG (species) [taxon 1196795], Anaerobutyricum hallii (species) [taxon 39488], Mus musculus (house mouse, species) [taxon 10090], Mediterraneibacter gnavus (species) [taxon 33038], Pseudomonas aeruginosa (species) [taxon 287], Prevotella (genus) [taxon 838], Salmonella enterica subsp. enterica serovar Typhi (no rank) [taxon 90370], Lacticaseibacillus rhamnosus (species) [taxon 47715], Klebsiella pneumoniae (species) [taxon 573], Listeria (genus) [taxon 1637], Levilactobacillus brevis (species) [taxon 1580], Fusobacterium nucleatum (species) [taxon 851], Coxiella burnetii (species) [taxon 777], Eubacteriales (order) [taxon 186802], Clostridium sporogenes (species) [taxon 1509], Bacteriophage sp. (species) [taxon 38018], Phocaeicola vulgatus (species) [taxon 821], Bilophila wadsworthia (species) [taxon 35833], Lactiplantibacillus plantarum (species) [taxon 1590], gut metagenome (species) [taxon 749906], [Eubacterium] siraeum (species) [taxon 39492], Bacilli (class) [taxon 91061], Limosilactobacillus reuteri (species) [taxon 1598], Christensenella minuta (species) [taxon 626937], Anaerobutyricum soehngenii (species) [taxon 105843], Porphyromonas gingivalis (species) [taxon 837], Akkermansia muciniphila (species) [taxon 239935], Roseburia intestinalis (species) [taxon 166486], Klebsiella oxytoca (species) [taxon 571], Butyricicoccus pullicaecorum (species) [taxon 501571], Mycobacterium tuberculosis variant bovis (biotype) [taxon 1765], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Mycobacterium tuberculosis (species) [taxon 1773], Anaerostipes caccae (species) [taxon 105841], Collinsella (genus) [taxon 102106]
- **Cell lines:** HCT116 — Homo sapiens (Human), Colon carcinoma, Cancer cell line (CVCL_0291), PC-3 — Homo sapiens (Human), Prostate carcinoma, Cancer cell line (CVCL_0035), LNCaP — Homo sapiens (Human), Prostate carcinoma, Cancer cell line (CVCL_0395), RWPE-1 — Homo sapiens (Human), Transformed cell line (CVCL_3791), HeLa — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_0030)

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## References

16 references — full list in the complete paper: https://tomesphere.com/paper/PMC12920367/full.md

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Source: https://tomesphere.com/paper/PMC12920367