# The clinical significance and prognostic implication of autophagy-related gene 13 in human gastric cancer

**Authors:** Yanjie You, Wenmei Li, Yudi Feng, Ling Gao, Tiantian Li, Xiaoli Zhang, Xiaomei Luo

PMC · DOI: 10.3389/fonc.2026.1729996 · Frontiers in Oncology · 2026-02-06

## TL;DR

This study explores the role of the autophagy-related gene 13 (ATG13) in gastric cancer, finding that its elevated expression is linked to poor patient outcomes and cancer progression.

## Contribution

The study identifies ATG13 as a potential prognostic biomarker for gastric cancer, linking its expression to tumor growth and metastasis.

## Key findings

- ATG13 expression is significantly higher in gastric cancer tissues compared to noncancerous tissues.
- High ATG13 expression is associated with larger tumor size and worse patient survival outcomes.
- Silencing ATG13 inhibits gastric cancer cell growth and metastasis in experimental models.

## Abstract

Gastric cancer remains a leading cause of cancer-related death worldwide, underscoring the need for novel prognostic biomarkers to guide personalized therapy. Previous studies have identified that the autophagy-related gene 13 (ATG13) plays an essential role in cell biological processes, while its clinical significance and prognostic values in gastric cancer remain unclear.

Bioinformatic analyses were conducted to assess the transcription levels and genomic alterations of the ATG13 gene in gastric cancer. Immunohistochemistry was also utilized to evaluate the association between ZHX3 protein expression and clinicopathologic variables as well as patient survival. In addition, cell proliferation, colony formation and invasion assays were performed to examine the impacts of silencing ATG13 expression on gastric cancer cell growth and metastasis.

ATG13 expression was significantly elevated in gastric cancer tissues compared to noncancerous tissues, which was strongly associated with large tumor size and poor outcomes in patients with gastric cancer. Multivariate analysis indicated that ATG13 expression was an independent prognostic indicator for patient survival. Silencing ATG13 expression functionally inhibited growth and metastasis of gastric cancer cells.

The above findings suggest that dysregulation of ATG13 expression is involved in gastric cancer progression and may serve as a candidate survival biomarker for this malignancy, which warrant further validation by further in vitro/in vivo models and clinical studies to strengthen the mechanistic evidence and translational potential in our future work.

## Linked entities

- **Genes:** ATG13 (autophagy related 13) [NCBI Gene 9776], ZHX3 (zinc fingers and homeoboxes 3) [NCBI Gene 23051]
- **Diseases:** gastric cancer (MONDO:0001056)

## Full-text entities

- **Genes:** ARHGAP1 (Rho GTPase activating protein 1) [NCBI Gene 392] {aka CDC42GAP, RHOGAP, RHOGAP1, p50rhoGAP}, AMBRA1 (autophagy and beclin 1 regulator 1) [NCBI Gene 55626] {aka DCAF3, WDR94}, ULK1 (unc-51 like autophagy activating kinase 1) [NCBI Gene 8408] {aka ATG1, ATG1A, UNC51, Unc51.1, hATG1}, PTPRT (protein tyrosine phosphatase receptor type T) [NCBI Gene 11122] {aka R-PTP-T, RPTP-rho, RPTPrho}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, RB1CC1 (RB1 inducible coiled-coil 1) [NCBI Gene 9821] {aka ATG17, CC1, FIP200, PPP1R131}, MAP1LC3A (microtubule associated protein 1 light chain 3 alpha) [NCBI Gene 84557] {aka ATG8E, LC3, LC3A, MAP1ALC3, MAP1BLC3}, NUP62 (nucleoporin 62) [NCBI Gene 23636] {aka IBSN, SNDI, p62}, HARBI1 (harbinger transposase derived 1) [NCBI Gene 283254] {aka C11orf77}, VPS13B (vacuolar protein sorting 13 homolog B) [NCBI Gene 157680] {aka BLTP5B, CHS1, COH1}, ZHX3 (zinc fingers and homeoboxes 3) [NCBI Gene 23051] {aka TIX1}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, CHST1 (carbohydrate sulfotransferase 1) [NCBI Gene 8534] {aka C6ST, GST-1, KS6ST, KSGal6ST, KSST}, TTN (titin) [NCBI Gene 7273] {aka CMD1G, CMH9, CMPD4, CMYO5, CMYP5, EOMFC}, MAPK8IP1 (mitogen-activated protein kinase 8 interacting protein 1) [NCBI Gene 9479] {aka IB1, JIP-1, JIP1, PRKM8IP}, SYNE1 (spectrin repeat containing nuclear envelope protein 1) [NCBI Gene 23345] {aka 8B, AMC3, AMCM, ARCA1, C6orf98, CPG2}, CRY2 (cryptochrome circadian regulator 2) [NCBI Gene 1408] {aka HCRY2, PHLL2}, ATG13 (autophagy related 13) [NCBI Gene 9776] {aka KIAA0652, PARATARG8}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, CDK10 (cyclin dependent kinase 10) [NCBI Gene 8558] {aka ALSAS, PISSLRE}
- **Diseases:** cancers (MESH:D009369), Helicobacter pylori infection (MESH:D016481), epithelial ovarian cancer (MESH:D000077216), Gastric cancer (MESH:D013274), primary (MESH:D010538), polycystic ovary syndrome (MESH:D011085), death (MESH:D003643), metastasis (MESH:D009362), TNM (MESH:D008207), breast cancer (MESH:D001943), stomach (MESH:D013272)
- **Chemicals:** paraffin (MESH:D010232), SDS (MESH:D012967), 5-FU (MESH:D005472), MTT (MESH:C070243), Lipofectamine 2000 (MESH:C086724), hematoxylin (MESH:D006416), crystal violet (MESH:D005840), 3-(4, 5-dimethylthiazol-2-yl)-2, 5-diphenyl-2H-tetrazolium bromide (-), cisplatin (MESH:D002945), formalin (MESH:D005557), alcohol (MESH:D000438), PVDF (MESH:C024865), 3, 3'-diaminobenzidine (MESH:D015100), paraformaldehyde (MESH:C003043)
- **Species:** Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Nicotiana tabacum (American tobacco, species) [taxon 4097], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** MKN45 — Homo sapiens (Human), Gastric adenocarcinoma, Cancer cell line (CVCL_0434), TCHu22 — Mus musculus (Mouse), Hybridoma (CVCL_B4FN), HGC27 — Homo sapiens (Human), Gastric carcinoma, Cancer cell line (CVCL_1279)

## Full text

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## Figures

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## References

26 references — full list in the complete paper: https://tomesphere.com/paper/PMC12920215/full.md

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Source: https://tomesphere.com/paper/PMC12920215