# Matrix Metalloproteinase‐13 Is an Unfavorable Prognostic Factor in Chordoma by Digesting Growth Inhibitory Collagens

**Authors:** Yumiko Oishi, Katsuhiro Kawaai, Ryota Tamura, Yukiko Kuroda, Shinobu Noji, Masahiro Toda, Koichi Matsuo

PMC · DOI: 10.1002/cam4.71662 · Cancer Medicine · 2026-02-19

## TL;DR

This study shows that high levels of MMP13 in chordoma tumors are linked to worse outcomes, as it breaks down growth-inhibiting collagen, potentially making the cancer more aggressive.

## Contribution

The novel finding is that MMP13 degrades COL2 in chordoma, linking it to poor prognosis and suggesting it as a therapeutic target.

## Key findings

- Safranin-O-negative chordomas have shorter progression-free survival compared to safranin-O-positive ones.
- MMP13 expression is higher in safranin-O-negative chordomas and correlates with worse survival.
- MMP13 inhibition reduces collagen digestion and COL2 suppresses chordoma cell growth more than COL1.

## Abstract

Chordomas are low‐grade but invasive tumors with limited therapies. Some conventional chordomas exhibit cartilage‐like extracellular matrix (ECM). This study examined the expression and clinical significance of collagenases in chordomas.

Brachyury‐positive primary chordoma tissues were analyzed by immunohistochemistry for matrix metalloproteinase (MMP)13, MMP9, and cathepsin K, and by immunofluorescence for MMP13 and MMP9. ECM phenotype was categorized using safranin‐O staining, where safranin‐O marks cartilage‐like ECM. We compared MMP13 expression scores and progression‐free survival (PFS) between safranin‐O‐negative and ‐positive groups. Collagenase gene expression and protein localization in JHC7 cells were analyzed by quantitative PCR and immunocytochemistry, respectively. Collagen digestion activity was evaluated using fluorescein isothiocyanate–labeled type II collagen (COL2) in the presence or absence of an MMP13‐specific inhibitor. Cell growth was evaluated in the presence of type I collagen (COL1) or COL2.

Safranin‐O negative chordomas had shorter PFS than safranin‐O positive chordomas (p = 0.016). MMP13 was expressed in human chordoma tissues and JHC7 cells; the MMP13 expression score was higher in safranin‐O‐negative chordomas than in safranin‐O‐positive chordomas (p = 0.018). JHC7 cells digested COL2, and digestion was partially but significantly inhibited by an MMP13‐specific inhibitor (p < 0.05). COL2 inhibited the growth of JHC7 cells more strongly than COL1 in a dose‐dependent manner (p < 0.01).

MMP13 may promote aggressive behavior in chordoma by degrading growth‐inhibitory COL2‐rich ECM. These data support MMP13 as a potential unfavorable prognostic marker and therapeutic target in chordoma.

## Linked entities

- **Genes:** MMP13 (matrix metallopeptidase 13) [NCBI Gene 4322], MMP9 (matrix metallopeptidase 9) [NCBI Gene 4318], brachyury (transcription factor protein) [NCBI Gene 778911]
- **Proteins:** MMP13 (matrix metallopeptidase 13), MMP9 (matrix metallopeptidase 9), col-2 (Cuticle collagen 2), COL1 (CONSTANS-like 1)
- **Diseases:** chordoma (MONDO:0008978)
- **Species:** Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** MMP1 (matrix metallopeptidase 1) [NCBI Gene 4312] {aka CLG}, T (brachyury, T-box transcription factor T) [NCBI Gene 20997] {aka Bra, D17Mit170, Low, Lr, T1, Tbxt}, MMP2 (matrix metallopeptidase 2) [NCBI Gene 4313] {aka CLG4, CLG4A, MMP-2, MMP-II, MONA, TBE-1}, Mmp9 (matrix metallopeptidase 9) [NCBI Gene 17395] {aka B/MMP9, Clg4b, Gel B, MMP-9, pro-MMP-9}, CTSK (cathepsin K) [NCBI Gene 1513] {aka CTS02, CTSO, CTSO1, CTSO2, PKND, PYCD}, Cd24a (CD24a antigen) [NCBI Gene 12484] {aka Cd24, HSA, Ly-52, nectadrin}, MMP13 (matrix metallopeptidase 13) [NCBI Gene 4322] {aka CLG3, MANDP1, MDST, MMP-13}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, Mmp13 (matrix metallopeptidase 13) [NCBI Gene 17386] {aka Clg, MMP-13, Mmp1}, Ctsk (cathepsin K) [NCBI Gene 13038] {aka MMS10-Q, Ms10q, catK}, TBX1 (T-box transcription factor 1) [NCBI Gene 6899] {aka CAFS, CATCH22, CTHM, DGCR, DGS, DORV}, CTSB (cathepsin B) [NCBI Gene 1508] {aka APPS, CPSB, KWE, RECEUP}, MMP9 (matrix metallopeptidase 9) [NCBI Gene 4318] {aka CLG4B, GELB, MANDP2, MMP-9}, TIMP1 (TIMP metallopeptidase inhibitor 1) [NCBI Gene 7076] {aka CLGI, EPA, EPO, HCI, TIMP, TIMP-1}, CD24 (CD24 molecule) [NCBI Gene 100133941] {aka CD24A}
- **Diseases:** Chordoma (MESH:D002817), ischemia (MESH:D007511), cranial nerve palsies (MESH:D003389), cartilage tumors (MESH:D002357), cancer (MESH:D009369), cerebral ischemia (MESH:D002545), RMST (MESH:D002313), Grade II and III chondrosarcomas (MESH:D002813), base (MESH:D019292), brain stem compression (MESH:D020295)
- **Chemicals:** phenol (MESH:D019800), iron (MESH:D007501), HCl (MESH:D006851), isopropanol (MESH:D019840), acetic acid (MESH:D019342), ethanol (MESH:D000431), Paraffin (MESH:D010232), salt (MESH:D012492), FITC (MESH:D016650), Triton X-100 (MESH:D017830), citrate (MESH:D019343), nucleosides (MESH:D009705), paraformaldehyde (MESH:C003043), PBS (MESH:D007854), DMSO (MESH:D004121), DAPI (MESH:C007293), glucose (MESH:D005947), Formalin (MESH:D005557), Safranin-O (MESH:C009195), CL-22 (-), hematoxylin (MESH:D006416), Alexa Fluor 647 (MESH:C569686), Fast Green (MESH:C035906)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Bos taurus (bovine, species) [taxon 9913], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** HEK293FT — Homo sapiens (Human), Transformed cell line (CVCL_6911), JHC7 — Homo sapiens (Human), Sacral chordoma, Cancer cell line (CVCL_L154), HeLa — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_0030), U-87 MG — Homo sapiens (Human), Glioblastoma, Cancer cell line (CVCL_0022), HEK293 — Homo sapiens (Human), Transformed cell line (CVCL_0045)

## Full text

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## Figures

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## References

44 references — full list in the complete paper: https://tomesphere.com/paper/PMC12920066/full.md

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Source: https://tomesphere.com/paper/PMC12920066