# Identification and functional characterization of a novel pathogenic COL1A1 splicing variant in a Chinese family with osteogenesis imperfecta

**Authors:** Hongjuan Nie, Yuanxiong Chen, Peifang Qin, Guiming Xie, Di Zhang, Yifan Sun, Yongjun Mo

PMC · DOI: 10.3389/fgene.2026.1758799 · Frontiers in Genetics · 2026-02-06

## TL;DR

A new genetic mutation in COL1A1 causing mild bone fragility was identified in a Chinese family, with functional tests confirming its role in abnormal protein splicing.

## Contribution

A novel splice-site variant in COL1A1 is identified and functionally validated as pathogenic in a Chinese OI family.

## Key findings

- A novel heterozygous splice-site variant (c.298 + 1G>A) in COL1A1 was identified and co-segregates with the disease.
- Functional assays showed the mutation causes abnormal splicing and frameshift transcripts with premature termination codons.
- The variant is associated with a mild OI phenotype and expands the known COL1A1 mutation spectrum.

## Abstract

Osteogenesis imperfecta (OI) is a hereditary disorder primarily caused by mutations in COL1A1 or COL1A2, leading to bone fragility and deformities. Although numerous pathogenic variants have been identified, novel mutations in specific populations remain underreported, complicating diagnosis and genetic counseling.

A Chinese family with mild type I OI was recruited. Whole-exome sequencing and Sanger sequencing were used to identify and validate a novel splice-site variant in COL1A1. Functional effects were assessed using two minigene constructs (pcMINI-COL1A1 and pcMINI-N-COL1A1) transfected into HEK293T cells, followed by reverse transcription-polymerase chain reaction (RT-PCR) and sequencing of transcripts.

A novel heterozygous splice-site variant (c.298 + 1G>A) at the donor site of COL1A1 intron 2 was identified and found to co-segregate with the disease. Minigene assays demonstrated that this mutation induces abnormal splicing patterns, including partial and complete skipping of exon 2, resulting in frameshifted transcripts with premature termination codons.

The c.298 + 1G>A variant leads to aberrant splicing and likely haploinsufficiency, consistent with a mild OI phenotype. This study expands the COL1A1 mutation spectrum and supports the use of functional assays for clarifying pathogenicity.

## Linked entities

- **Genes:** COL1A1 (collagen type I alpha 1 chain) [NCBI Gene 1277], COL1A2 (collagen type I alpha 2 chain) [NCBI Gene 1278]
- **Diseases:** osteogenesis imperfecta (MONDO:0019019), OI (MONDO:0019019)

## Full-text entities

- **Genes:** COL1A1 (collagen type I alpha 1 chain) [NCBI Gene 1277] {aka CAFYD, EDSARTH1, EDSC, OI1, OI2, OI3}, COL1A2 (collagen type I alpha 2 chain) [NCBI Gene 1278] {aka EDSARTH2, EDSCV, OI4}
- **Diseases:** type III (MESH:C536044), low-trauma fractures (MESH:D009800), deformities (MESH:D009140), collagen defect (MESH:D003095), skeletal damage (MESH:C535850), type II (perinatal lethal) (MESH:C564306), II (MESH:C537730), collapse (MESH:D001261), humeral fracture (MESH:D006810), vertebral (MESH:C535781), Compression deformities of thoracic and lumbar vertebrae (MESH:D013901), I (MESH:D006969), osteopenia (MESH:D001851), femoral neck fracture (MESH:D005265), Skeletal abnormalities (MESH:D009139), structurally abnormal collagen (MESH:C566527), bone fragility (MESH:C536063), genetic disorders (MESH:D030342), fragility fractures (MESH:D005600), hereditary disorder (MESH:D009386), inherited connective tissue disorder (MESH:C535910), fracture (MESH:D050723), thoracolumbar pain (MESH:D010146), vertebral compression deformities (MESH:D009408), OI type II (MESH:C536042), trauma (MESH:D014947), OI (MESH:D010013), limb-length discrepancy (MESH:D007870)
- **Chemicals:** lipid (MESH:D008055), agarose (MESH:D012685), CO2 (MESH:D002245), bisphosphonate (MESH:D004164), penicillin (MESH:D010406), DMEM (-), PEI (MESH:C433673), streptomycin (MESH:D013307)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** c.3814 + 1G>T, G>A, c.2451 + 77C>T, 3531+1G>T, c.298 + 1G>A, c.298 + 1G>A
- **Cell lines:** pcMINI-N — Homo sapiens (Human), Finite cell line (CVCL_UZ57), 293T — Homo sapiens (Human), Transformed cell line (CVCL_0063)

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## References

28 references — full list in the complete paper: https://tomesphere.com/paper/PMC12919943/full.md

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Source: https://tomesphere.com/paper/PMC12919943