# Multi-omics analysis identifies PPARα as a key inhibitor of hepatocyte ferroptosis in sepsis-associated liver injury

**Authors:** Shi-Ling He, Jian-Chuan Lin, Gao-Fang Wu, He-fan He

PMC · DOI: 10.1371/journal.pone.0338591 · PLOS One · 2026-02-19

## TL;DR

This study identifies PPARα as a key inhibitor of liver cell death in sepsis-related liver injury, offering new insights for treatment.

## Contribution

The study validates PPARα as a novel therapeutic target for sepsis-associated liver injury through multi-omics and experimental validation.

## Key findings

- PPARα is significantly downregulated in sepsis-associated liver injury and is predominantly expressed in hepatocytes.
- PPARα agonist WY-14643 effectively blocks sepsis-induced hepatic ferroptosis in both in vivo and in vitro models.
- Ferroptosis-related differentially expressed genes are enriched in the PPAR signaling pathway and are linked to liver cell death processes.

## Abstract

Sepsis-associated liver injury (SLI) increases the risk of death in septic patients, and a primary pathological alteration in sepsis is ferroptosis in the liver. However, the specific mechanism of its occurrence remains largely unclear. Our work is to validate key pathways connected with ferroptosis in SLI and elucidate potential pharmaceutical targets involved in this process.

To confirm targets related to SLI, we screened three SLI microarray datasets (GSE23767, GSE40180 and GSE104342) from the GEO database and obtained the ferroptosis-related differentially expressed genes (FRDEGs). A functional enrichment analysis of FRDEGs was performed. The protein–protein interaction network was used to visualize the interactive relationship of FRDEGs. Additionally, the potential biological functions and enrichment pathways of FRDEGs were elucidated through GO and KEGG analysis. Furthermore, we obtained the single-cell dataset (GSE238000) from liver tissue from GEO database to determine the series of cell subtype mainly expressing target molecules. Finally, we performed a serial of in vivo and in vitro experiments to further validate the findings of bioinformatic analysis.

A total of 51 genes that are expressed differently in SLI involve ferroptosis. These genes are involved in negative regulation of apoptotic process, the endoplasmic reticulum, and identical protein binding. The KEGG pathway study revealed that they were mainly involved in the PPAR signaling pathway. Among three isoforms of PPAR family, PPARα is most abundant in the liver. We then observed that it was significantly downregulated in hepatic tissue of SLI mice and PPARα agonist WY-14643 effectively blocked sepsis-induced hepatic ferroptosis. Subsequently, single-cell analysis demonstrated that PPARα is predominantly expressed in hepatocytes, which was downregulated in LPS-treated THLE-2 cells. Notably, consistent with the in vivo results, PPARα activator WY-14643 also significantly alleviated LPS-induced ferroptosis in THLE-2 cells.

The validation of ferroptosis-related pathway PPARα in this study greatly deepens our understanding of the potential mechanism of SLI, and provide promising therapeutic targets for the disease.

## Linked entities

- **Genes:** PPARA (peroxisome proliferator activated receptor alpha) [NCBI Gene 5465]
- **Chemicals:** WY-14643 (PubChem CID 5694)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Ms4a1 (membrane-spanning 4-domains, subfamily A, member 1) [NCBI Gene 12482] {aka Cd20, Ly-44, Ms4a2}, Cd68 (CD68 antigen) [NCBI Gene 12514] {aka Lamp4, Scard1, gp110}, AGER (advanced glycosylation end-product specific receptor) [NCBI Gene 177] {aka RAGE, SCARJ1, sRAGE}, Ighg1 (immunoglobulin heavy constant gamma 1 (G1m marker)) [NCBI Gene 16017] {aka IgG1, Igh-4, VH7183}, Tpsb2 (tryptase beta 2) [NCBI Gene 17229] {aka MMCP-6, Mcp-6, Mcp6, Mcpt6}, Rgs5 (regulator of G-protein signaling 5) [NCBI Gene 19737] {aka 1110070A02Rik}, Jchain (immunoglobulin joining chain) [NCBI Gene 16069] {aka 9530090F24Rik, Igj, Jch}, Acta2 (actin alpha 2, smooth muscle, aorta) [NCBI Gene 11475] {aka 0610041G09Rik, Actvs, SMAalpha, SMalphaA, a-SMA, alphaSMA}, Cd79a (CD79A antigen (immunoglobulin-associated alpha)) [NCBI Gene 12518] {aka Ig-alpha, Iga, Igalpha, Ly-54, Ly54, mb-1}, PTGS2 (prostaglandin-endoperoxide synthase 2) [NCBI Gene 5743] {aka COX-2, COX2, GRIPGHS, PGG/HS, PGHS-2, PHS-2}, Krt5 (keratin 5) [NCBI Gene 110308] {aka 3300001P10Rik, CK5, K5, Krt2-5, Tfip8}, Cd74 (CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)) [NCBI Gene 16149] {aka CLIP, DHLAG, HLADG, Ia-GAMMA, Ii}, Il1b (interleukin 1 beta) [NCBI Gene 16176] {aka IL-1beta, Il-1b}, S100a2 (S100 calcium binding protein A2) [NCBI Gene 628324] {aka CaN19, EG628324, S100L}, Pparg (peroxisome proliferator activated receptor gamma) [NCBI Gene 19016] {aka Nr1c3, PPAR-gamma, PPAR-gamma2, PPARgamma, PPARgamma2}, Trac (T cell receptor alpha constant) [NCBI Gene 100101484] {aka Gm16914, Tcra, Tcra-C}, Fads2 (fatty acid desaturase 2) [NCBI Gene 56473] {aka 2900042M13Rik, Fads2a, Fadsd2}, Lum (lumican) [NCBI Gene 17022] {aka Ldc, SLRR2D}, Cd4 (CD4 antigen) [NCBI Gene 12504] {aka L3T4, Ly-4}, Il6 (interleukin 6) [NCBI Gene 16193] {aka Il-6}, Mcam (melanoma cell adhesion molecule) [NCBI Gene 84004] {aka 1-gicerin, CD146, CD149, Muc18, s-endo, s-gicerin}, Ighg3 (Immunoglobulin heavy constant gamma 3) [NCBI Gene 380795] {aka IgG3}, Ppard (peroxisome proliferator activator receptor delta) [NCBI Gene 19015] {aka NUC-1, NUC1, Nr1c2, PPAR-beta, PPAR-delta, PPAR[b]}, Col3a1 (collagen, type III, alpha 1) [NCBI Gene 12825] {aka Col3a-1, Tsk-2, Tsk2}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, Col15a1 (collagen, type XV, alpha 1) [NCBI Gene 12819], Cd8a (CD8 subunit alpha) [NCBI Gene 12525] {aka Ly-2, Ly-35, Ly-B, Lyt-2}, Tfrc (transferrin receptor) [NCBI Gene 22042] {aka 2610028K12Rik, CD71, E430033M20Rik, Mtvr1, TFR, TFR1}, Cd19 (CD19 antigen) [NCBI Gene 12478], Kit (Kit proto-oncogene receptor tyrosine kinase) [NCBI Gene 16590] {aka Bs, CD117, Fdc, Gsfsco1, Gsfsco5, Gsfsow3}, Gpx4 (glutathione peroxidase 4) [NCBI Gene 625249] {aka GPx-4, GSHPx-4, PHGPx, mtPHGPx, snGPx}, Cd3d (CD3 antigen, delta polypeptide) [NCBI Gene 12500] {aka T3d}, Shc2 (SHC (Src homology 2 domain containing) transforming protein 2) [NCBI Gene 216148] {aka 6720466E06, SCK, ShcB, Sli}, Ywhah (tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide) [NCBI Gene 22629], Aqp1 (aquaporin 1) [NCBI Gene 11826] {aka CHIP28}, Cpa3 (carboxypeptidase A3, mast cell) [NCBI Gene 12873] {aka MC-CPA}, TFRC (transferrin receptor) [NCBI Gene 7037] {aka CD71, IMD46, T9, TFR, TFR1, TR}, Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, UBE2K (ubiquitin conjugating enzyme E2 K) [NCBI Gene 3093] {aka E2-25K, HIP2, HYPG, LIG, UBC1}, Krt14 (keratin 14) [NCBI Gene 16664] {aka CK-14, K14, Krt-1.14, Krt1-14}, PPARA (peroxisome proliferator activated receptor alpha) [NCBI Gene 5465] {aka NR1C1, PPAR, PPAR-alpha, PPARalpha, hPPAR}, Dcn (decorin) [NCBI Gene 13179] {aka DC, DSPG2, PG40, PGII, PGS2, SLRR1B}, Vwf (Von Willebrand factor) [NCBI Gene 22371] {aka 6820430P06Rik, B130011O06Rik, C630030D09, F8VWF, VWD}, Pecam1 (platelet/endothelial cell adhesion molecule 1) [NCBI Gene 18613] {aka Cd31, PECAM-1, Pecam}, Ppara (peroxisome proliferator activated receptor alpha) [NCBI Gene 19013] {aka 4933429D07Rik, Nr1c1, PPAR-alpha, PPARalpha, Ppar}, Ptgs2 (prostaglandin-endoperoxide synthase 2) [NCBI Gene 19225] {aka COX2, Cox-2, PES-2, PGHS-2, PHS II, PHS-2}, Lyz1 (lysozyme 1) [NCBI Gene 17110] {aka Lyz, Lyzf3, Lzp-s}, Tpsab1 (tryptase alpha/beta 1) [NCBI Gene 100503895] {aka MMCP-7, Mcp-7, Mcp7, Mcpt7}, Epcam (epithelial cell adhesion molecule) [NCBI Gene 17075] {aka CD326, EGP, EGP-2, Egp314, Ep-CAM, EpCAM1}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, Tagln (transgelin) [NCBI Gene 21345] {aka Sm22, Sm22a, Ws310}, Mzb1 (marginal zone B and B1 cell-specific protein 1) [NCBI Gene 69816] {aka 2010001M09Rik, PACAP, pERp1}, GPX4 (glutathione peroxidase 4) [NCBI Gene 2879] {aka GPx-4, GSHPx-4, MCSP, PHGPx, SMDS, snGPx}, RENBP (renin binding protein) [NCBI Gene 5973] {aka RBP, RNBP}, Col1a1 (collagen, type I, alpha 1) [NCBI Gene 12842] {aka Col1a-1, Cola-1, Cola1, Mov-13, Mov13}
- **Diseases:** cancer (MESH:D009369), diabetes (MESH:D003920), pulmonary injury (MESH:D055370), Epstein-Barr virus infection (MESH:D020031), hepatic inflammation (MESH:D007249), hepatic dysfunction (MESH:D008107), neurodegenerative disorders (MESH:D019636), trauma (MESH:D014947), shock (MESH:D012769), mitochondrial dysfunction (MESH:D028361), Parkinson's and Alzheimer's diseases (MESH:D010300), pain (MESH:D010146), IgA nephropathy (MESH:D005922), acute myeloid leukemia (MESH:D015470), lung adenocarcinoma (MESH:D000077192), hypoxic (MESH:D002534), multi-organ injury (MESH:D009102), hepatic steatosis (MESH:D005234), immune system (MESH:D007154), myocardial ischemia (MESH:D017202), cholestasis (MESH:D002779), coagulopathy (MESH:D001778), infection (MESH:D007239), reperfusion damage (MESH:D015427), atherosclerosis (MESH:D050197), death (MESH:D003643), diabetes complications (MESH:D048909), septic (MESH:D001170), Sepsis (MESH:D018805), adiposity (MESH:D018205), organ damage (MESH:D000092124), bacterial infections (MESH:D001424), Sepsis-associated liver injury (MESH:D017093), cardiac injury (MESH:D006331), hepatitis (MESH:D056486)
- **Chemicals:** prostaglandin (MESH:D011453), pentobarbital sodium (MESH:D010424), polyacrylamide (MESH:C016679), streptomycin (MESH:D013307), triglycerides (MESH:D014280), sodium dodecyl sulfate (MESH:D012967), GW6471 (MESH:C449302), water (MESH:D014867), Iron (MESH:D007501), PMSF (MESH:D010664), MDA (MESH:D008315), fatty acids (MESH:D005227), WY-14643 (MESH:C006253), celecoxib (MESH:D000068579), BEBM (-), penicillin (MESH:D010406), PVDF (MESH:C024865), PBS (MESH:D007854), glucose (MESH:D005947), BCA (MESH:C047117), CO2 (MESH:D002245), GSH (MESH:D005978), lipid (MESH:D008055), LPS (MESH:D008070), DHEA (MESH:D003687)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** THLE-2 — Homo sapiens (Human), Transformed cell line (CVCL_3803), C57BL/6 — Mus musculus (Mouse), Transformed cell line (CVCL_C0MU)

## Full text

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## References

43 references — full list in the complete paper: https://tomesphere.com/paper/PMC12919794/full.md

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Source: https://tomesphere.com/paper/PMC12919794