# Iron binding before iron limitation: siderophore synthesis arose well before iron became a limiting element

**Authors:** Ricardo Soares, Inês B Trindade, Ricardo O Louro

PMC · DOI: 10.1093/ismeco/ycag025 · ISME Communications · 2026-02-06

## TL;DR

The study suggests that siderophores, molecules that bind iron, evolved long before iron became scarce in Earth's environment, challenging previous assumptions.

## Contribution

The paper presents a molecular clock analysis showing that siderophore synthesis predates the Great Oxidation Event by over a billion years.

## Key findings

- Siderophore synthetases emerged over 1 billion years before the Great Oxidation Event.
- Ferric siderophore reductases and esterases also predate the Great Oxidation Event by about 1 billion years.
- The early emergence of siderophores may be linked to microbial interactions with iron minerals rather than nutrient limitation.

## Abstract

It is widely accepted that the use of siderophores, small molecules that bind and solubilize iron, emerged as a response to the dramatic reduction in bioavailability of this metal in aquatic environments caused by precipitation of iron oxides associated with the Great Oxidation Event (GOE). Here, we report a molecular clock analysis of the time of emergence of siderophore biosynthesis and utilization genes that challenges this view and argues for an emergence of these secondary metabolites that largely predates GOE. The emergence date of Non-ribosomal Peptide Synthase Independent Siderophore synthetases is found to predate by more than 1 Gy the emergence date of ferric siderophore reductases and esterases, which in turn also predate the GOE by approximately 1Gy. This temporal gap is surprising given that these enzymes are essential for microorganisms to obtain iron from siderophores. This timing of events raises questions on the original ecological drivers for the emergence of siderophores. We offer an alternative hypothesis for the origin of siderophores which is their use in ferric mineral dissolution to avoid incrustation of neutrophilic iron oxidizers by metabolically generated ferric iron minerals. The observations and hypothesis reported here highlight the importance of environmental microbe-mineral interactions, beyond nutrient acquisition, as critical selective forces in early Earth, and call for a reassessment of the timing and drivers of siderophore evolution.

## Linked entities

- **Genes:** LOC6632971 (esterase S) [NCBI Gene 6632971]
- **Chemicals:** iron (PubChem CID 23925)

## Full-text entities

- **Genes:** SLC5A5 (solute carrier family 5 member 5) [NCBI Gene 6528] {aka NIS, TDH1}, RBM14 (RNA binding motif protein 14) [NCBI Gene 10432] {aka COAA, PSP2, SIP, SYTIP1, TMEM137}, POR (cytochrome p450 oxidoreductase) [NCBI Gene 5447] {aka CPR, CYPOR, P450R}
- **Diseases:** FES (MESH:C566173)
- **Chemicals:** 2Fe-2S (-), Iron (MESH:D007501), iron oxides (MESH:C000499)
- **Species:** Verrucomicrobiota (phylum) [taxon 74201], Thermodesulfobacteriota (phylum) [taxon 200940], Planctomycetota (phylum) [taxon 203682], Chlamydiota (phylum) [taxon 204428]

## Full text

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## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12919436/full.md

## References

20 references — full list in the complete paper: https://tomesphere.com/paper/PMC12919436/full.md

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Source: https://tomesphere.com/paper/PMC12919436