# The Association of Environmental Variables with Intelligence and Well-Being in Copy Number Variation (CNV) Carriers

**Authors:** Yelyzaveta Snihirova, Sebastien Jacquemont, Gabriëlla Blokland, Sinan Guloksuz, Therese Amelsvoort van, David Linden

PMC · DOI: 10.21203/rs.3.rs-8611446/v1 · Research Square · 2026-02-10

## TL;DR

This study explores how environmental factors like SES and stress interact with specific CNVs to affect intelligence and well-being, aiming to guide personalized interventions.

## Contribution

The study identifies novel environmental interactions with CNVs that influence cognitive and emotional outcomes in carriers.

## Key findings

- 16p11.2 distal deletion carriers in moderate SES had lower fluid intelligence than non-carriers in the same SES group.
- Higher adulthood stress was linked to increased fluid intelligence in 16p11.2 proximal duplication carriers.
- 15q11.2 deletion carriers with moderately healthy lifestyles had significantly lower fluid intelligence than non-carriers.

## Abstract

Copy Number Variants (CNVs) are structural genomic alterations that have been linked to cognitive deficits and susceptibility to neurodevelopmental and psychiatric disorders, with their impact often shaped by interactions with environmental factors such as socioeconomic status (SES), stress, and lifestyle. This study leverages UK Biobank data to explore how these interactions influence fluid intelligence and well-being, two key indicators of cognitive and psychosocial functioning, in CNV carriers, aiming to identify factors for personalized interventions. We investigated interactions between common pathological CNVs – 1q21.1 distal, 15q11.2, 15q13.3 BP4–BP5, 16p11.2 proximal and distal, and 22q11.2 proximal and distal – and key environmental variables, including SES, stress, and lifestyle, on fluid intelligence and well-being. Using ANOVA models with interaction terms, we examined how interactions between CNV status and environmental factors impact cognition and well-being. SES variables interacted with CNV status in distinct ways. While non-carriers exhibited the expected association of higher fluid intelligence with increasing SES, 16p11.2 distal deletion carriers in the moderate SES group had lower fluid intelligence than both non-carriers in the same SES group and carriers with low SES. Stress-related interactions varied by CNV type: in 16p11.2 proximal duplication carriers, higher adulthood stress was significantly associated with increased fluid intelligence. Furthermore, 15q11.2 deletion carriers exhibited significantly lower fluid intelligence in the moderately healthy lifestyle group compared to all non-carrier groups (p < 0.01). By revealing how environmental factors interact with CNV status, this study identifies potential targets for personalized interventions aimed at supporting cognitive and emotional resilience in genetically at-risk individuals.

## Full-text entities

- **Genes:** CYFIP1 (cytoplasmic FMR1 interacting protein 1) [NCBI Gene 23191] {aka P140SRA-1, SHYC, SRA-1, SRA1}, RABEP2 (rabaptin, RAB GTPase binding effector protein 2) [NCBI Gene 79874] {aka FRA}, DOC2A (double C2 domain alpha) [NCBI Gene 8448] {aka Doc2}, BP4 [NCBI Gene 474258], NOTCH2NLA (notch 2 N-terminal like A) [NCBI Gene 388677] {aka N2N, NOTCH2NL}, TAOK2 (TAO kinase 2) [NCBI Gene 9344] {aka MAP3K17, PSK, PSK1, PSK1-BETA, TAO1, TAO2}, NIPA1 (NIPA magnesium transporter 1) [NCBI Gene 123606] {aka FSP3, SLC57A1, SPG6}, NTF3 (neurotrophin 3) [NCBI Gene 4908] {aka HDNF, NGF-2, NGF2, NT-3, NT3}, BP5 [NCBI Gene 474301], MAPK1 (mitogen-activated protein kinase 1) [NCBI Gene 5594] {aka ERK, ERK-2, ERK2, ERT1, MAPK2, NS13}, MAPK3 (mitogen-activated protein kinase 3) [NCBI Gene 5595] {aka ERK-1, ERK1, ERT2, HS44KDAP, HUMKER1A, P44ERK1}, HLA-A (major histocompatibility complex, class I, A) [NCBI Gene 3105] {aka HLAA}, SEZ6L2 (seizure related 6 homolog like 2) [NCBI Gene 26470] {aka BSRPA, PSK-1}, SH2B1 (SH2B adaptor protein 1) [NCBI Gene 25970] {aka PSM, SH2B}, BCL9 (BCL9 transcription coactivator) [NCBI Gene 607] {aka LGS}, CHRNA7 (cholinergic receptor nicotinic alpha 7 subunit) [NCBI Gene 1139] {aka CHRNA7-2, NACHRA7, a7nAChR, nAChR7}
- **Diseases:** neurodevelopmental and psychiatric disorders (MESH:D001523), neurological conditions (MESH:D019636), Trauma (MESH:D014947), emotional dysregulation (MESH:D021081), 22q11.2 distal deletion (MESH:C567511), AS (MESH:D000079225), cognitive deficits (MESH:D003072), CNV (OMIM:610141)
- **Chemicals:** alcohol (MESH:D000438)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

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## References

48 references — full list in the complete paper: https://tomesphere.com/paper/PMC12919213/full.md

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Source: https://tomesphere.com/paper/PMC12919213