# Genome Analysis Reveals Diversity and Functional Potential of Novel Janthinobacterium Species From Subarctic Soils

**Authors:** Anil Kumar, Minna K. Männistö, Lee J. Kerkhof, Max M. Häggblom

PMC · DOI: 10.1002/mbo3.70239 · MicrobiologyOpen · 2026-02-19

## TL;DR

This paper describes two new cold-adapted bacteria species found in subarctic soils and explores their potential roles in carbon and nitrogen cycling.

## Contribution

The discovery and genomic characterization of two novel Janthinobacterium species from subarctic soils.

## Key findings

- The new species can degrade complex carbon and polyphenols in nutrient-poor subarctic soils.
- They have the ability to scavenge nitrogen from various sources in nitrogen-limited environments.
- They possess gene clusters for antimicrobial compound production and unique metabolic pathways.

## Abstract

The Arctic tundra and boreal forest regions are affected by ongoing climate change, leading to increased warming, increased plant production, and heightened microbial activity. Microbes play a key role in carbon release from stored soil organic matter, and characterizing their diversity and function in high‐latitude soils is thus of significant interest. The Pseudomonadota are abundant and diverse members of high‐latitude soils. Here, we describe two novel species of the genus Janthinobacterium, of the order Burkholderiales, isolated from tundra heath and northern boreal forest soils. The isolates are aerobic, chemoorganotrophic psychrophiles and are well‐adapted to the subarctic climate conditions. Phylogenomic analyses and ANI values confirmed the novelty of the strains, designated as Janthinobacterium silvisoli sp. nov. K2Li3 and Janthinobacterium saanense sp. nov. S3T4. Genome analysis revealed that the new species have the metabolic potential for degradation of complex carbon and polyphenols, which are abundant in tundra heath and lichen‐dominated, nutrient‐poor forest soils. The strains are well‐adapted to nitrogen‐limited soil ecosystems and can scavenge nitrogen from both organic and inorganic sources. Additionally, the strains harbor secondary metabolite gene clusters that encode antimicrobial compound production, potentially enhancing their competitiveness in the subarctic environment. The comparative pangenome analysis indicated that the strains have unique gene clusters for carbohydrate transport and metabolism, and energy generation and conservation. The genome‐based functional exploration enhances our understanding of this genus and how environmental conditions may shape the functionality and interactions of Janthinobacterium species in subarctic soil ecosystems.

The Pseudomonadota are abundant and diverse members of high‐latitude soils. Here, we describe two novel species, Janthinobacterium silvisoli and Janthinobacterium saanense, of the order Burkholderiales, isolated from tundra heath and northern boreal forest soils. The isolates are aerobic, chemoorganotrophic psychrophiles and are well‐adapted to the subarctic climate conditions. Genome analysis elucidated their potential roles in carbon degradation and the release of stored carbon from subarctic tundra and forest soils.

## Linked entities

- **Species:** Janthinobacterium silvisoli (taxon 2723081), Janthinobacterium saanense (taxon 2723079)

## Full-text entities

- **Diseases:** toxicity (MESH:D064420), multidrug (MESH:D018088)
- **Chemicals:** caffeic acid (MESH:C040048), 4-methylcatechol (MESH:C018599), copper (MESH:D003300), cellulose (MESH:D002482), molybdenum (MESH:D008982), beta-lactam (MESH:D047090), biotin (MESH:D001710), violacein (MESH:C063155), NAD (MESH:D009243), C12:0 (MESH:C030358), fusidic acid (MESH:D005672), reactive oxygen species (MESH:D017382), cyclic AMP (MESH:D000242), Ceramide (MESH:D002518), d-galactose (MESH:D005690), sphingosine (MESH:D013110), glucose (MESH:D005947), d-ribose (MESH:D012266), indole (MESH:C030374), hemicellulose (MESH:C007916), glyoxylate (MESH:C031150), tetrahydrofolate (MESH:C030371), glutathione (MESH:D005978), d-fructose (MESH:D005632), lignin (MESH:D008031), butanediol (MESH:D002072), daptomycin (MESH:D017576), Polyphenol (MESH:D059808), ubiquinone (MESH:D014451), cobalamin (MESH:D014805), catechin (MESH:D002392), xylan (MESH:D014990), d-xylose (MESH:D014994), l-arabinose (MESH:D001089), isoprenoid (MESH:D013729), naringenin (MESH:C005273), catechol (MESH:C034221), triclosan (MESH:D014260), sucrose (MESH:D013395), nucleotide (MESH:D009711), choline (MESH:D002794), urea (MESH:D014508), mupirocin (MESH:D016712), Nitrogen (MESH:D009584), carboxylic acids (MESH:D002264), heme (MESH:D006418), quercetin (MESH:D011794), amino acids (MESH:D000596), lactate (MESH:D019344), toluene (MESH:D014050), pectin (MESH:D010368), phloroglucinol (MESH:D010696), Carbon (MESH:D002244), fatty acid (MESH:D005227), pentose phosphate (MESH:D010428), Carbohydrate (MESH:D002241), phenylacetic acid (MESH:C025136), homoprotocatechuic acid (MESH:D015102), d-galacturonic acid (MESH:C007819), TCA (MESH:D014238)
- **Species:** Salmo trutta (river trout, species) [taxon 8032], Bacteriophage sp. (species) [taxon 38018], Rangifer tarandus (caribou, species) [taxon 9870], Salix arctica (species) [taxon 395313], Pinus sylvestris (Scotch pine, species) [taxon 3349], Cladonia stellaris (species) [taxon 174045], Empetrum nigrum (black crowberry, species) [taxon 191066], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Acidobacteriota (phylum) [taxon 57723], Verrucomicrobiota (phylum) [taxon 74201], Bacteroidota (Bacteroides-Cytophaga-Flexibacter group, phylum) [taxon 976], Herbaspirillum (genus) [taxon 963], Betula nana (alpine birch, species) [taxon 216990], Burkholderiales (order) [taxon 80840], Janthinobacterium (genus) [taxon 29580], Agaricus bisporus (common mushroom, species) [taxon 5341]
- **Mutations:** C-34 C, C-35 C
- **Cell lines:** K2Li3 — Mus musculus (Mouse), Malignant neoplasms of the mouse mammary gland, Cancer cell line (CVCL_JA64), S3T4T — Mus musculus (Mouse), Transformed cell line (CVCL_1E11), K2C7 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z833), S3T4 — Rattus norvegicus (Rat), Rat rhabdomyosarcoma, Cancer cell line (CVCL_0P66)

## Full text

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## Figures

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## References

89 references — full list in the complete paper: https://tomesphere.com/paper/PMC12917689/full.md

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Source: https://tomesphere.com/paper/PMC12917689