# PHLDA1 is a shared diagnostic and key mediator of inflammatory fibrosis in heart and kidney

**Authors:** Lei Hua, Liangru Shen, Yongshou Tao, Chentong Wang, Xiaohang Shao

PMC · DOI: 10.3389/fimmu.2026.1765221 · Frontiers in Immunology · 2026-02-05

## TL;DR

This study identifies PHLDA1 as a shared driver of fibrosis in heart and kidney diseases, offering a potential new target for treatment.

## Contribution

The discovery of PHLDA1 as a key mediator and diagnostic marker of inflammatory fibrosis in both heart and kidney.

## Key findings

- PHLDA1 is upregulated in cardiac M1 macrophages and injured kidney cells during inflammation-driven fibrosis.
- PHLDA1 promotes IL-1β expression and fibrosis through a positive feedback loop involving NF-κB signaling.
- Knockout of PHLDA1 reduces fibrosis in kidney and heart tissues.

## Abstract

Inflammation-driven fibrosis represents a common pathological endpoint in both heart failure (HF) and chronic kidney disease (CKD), which together affect over 1 billion people worldwide. Understanding the shared molecular mechanisms by which inflammation contributes to the pathogenesis of HF and CKD is crucial for enabling early diagnosis and guiding the development of broad-spectrum therapeutic strategies.

Utilizing multi-omics technologies and machine learning algorithms, we performed an integrative analysis of HF and CKD samples to uncover shared mechanisms underlying inflammation-induced fibrosis. Furthermore, key regulators identified through bioinformatic analysis were experimentally validated using primary cell co-culture assays, gene knockout approaches, and bulk RNA sequencing.

Single-nucleus RNA sequencing (snRNA-seq) revealed concurrent upregulation of IL-1β and Pleckstrin Homology-Like Domain Family A Member 1 (PHLDA1) in both cardiac M1 macrophages and injured proximal tubular epithelial (PTE) cells. PHLDA1 promotes IL-1β expression and the knockout of PHLDA1 suppressed NF-κB signaling and renal fibrosis. Administration of IL-1β induced PHLDA1 expression in cardiac fibroblasts and renal PDGFRβ+ cells, suggesting a positive feedback loop that contributes to fibrosis.

In this study, we identified PHLDA1 as a key driver of fibrosis in both the heart and kidney, acting through IL-1β mediated intercellular crosstalk. These findings indicate PHLDA1 as a potential therapeutic candidate for mitigating fibrosis in cardio-renal syndrome.

Diagram illustrating organ injury effects on heart and kidney, showing increased PHLDA1 in M1 macrophages and PTE cells, IL-1β release, fibroblast activation, and the development of cardiac and renal fibrosis. Shared key genes and signaling pathways are noted.

## Linked entities

- **Genes:** PHLDA1 (pleckstrin homology like domain family A member 1) [NCBI Gene 22822], IL1B (interleukin 1 beta) [NCBI Gene 3553], NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790]
- **Diseases:** heart failure (MONDO:0005252), chronic kidney disease (MONDO:0005300)

## Full-text entities

- **Genes:** CUBN (cubilin) [NCBI Gene 8029] {aka IFCR, IGS, IGS1, MGA1, gp280}, IL12B (interleukin 12B) [NCBI Gene 3593] {aka CLMF, CLMF2, IL-12B, IMD28, IMD29, NKSF}, GRN (granulin precursor) [NCBI Gene 2896] {aka CLN11, FTD2, GEP, GP88, PCDGF, PEPI}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, ACTA1 (actin alpha 1, skeletal muscle) [NCBI Gene 58] {aka ACTA, ASMA, CFTD, CFTD1, CFTDM, CMYO2A}, Hgf (hepatocyte growth factor) [NCBI Gene 15234] {aka C230052L06Rik, HGF/SF, NK1, NK2, SF, SF/HGF}, ACTA2 (actin alpha 2, smooth muscle) [NCBI Gene 59] {aka ACTSA, SMDYS}, Fn1 (fibronectin 1) [NCBI Gene 14268] {aka E330027I09, Fn, Fn-1}, CD68 (CD68 molecule) [NCBI Gene 968] {aka GP110, LAMP4, SCARD1}, PHLDA1 (pleckstrin homology like domain family A member 1) [NCBI Gene 22822] {aka DT1P1B11, PHRIP, TDAG51}, MAFF (MAF bZIP transcription factor F) [NCBI Gene 23764] {aka U-MAF, hMafF}, LIFR (LIF receptor subunit alpha) [NCBI Gene 3977] {aka CD118, LIF-R, SJS2, STWS, SWS}, APLN (apelin) [NCBI Gene 8862] {aka APEL, XNPEP2}, Il1 (interleukin 1 complex) [NCBI Gene 111343] {aka Il-1}, IL1R1 (interleukin 1 receptor type 1) [NCBI Gene 3554] {aka CD121A, CRMO3, D2S1473, IL-1R-alpha, IL-1RT1, IL1R}, CD34 (CD34 molecule) [NCBI Gene 947], Il6 (interleukin 6) [NCBI Gene 16193] {aka Il-6}, Phlda1 (pleckstrin homology like domain, family A, member 1) [NCBI Gene 21664] {aka DT1P1B11, TDAG51, Tdag}, Ngf (nerve growth factor) [NCBI Gene 18049] {aka Ngfb, beta-NGF}, REN (renin) [NCBI Gene 5972] {aka ADTKD4, HNFJ2, RTD}, PPIA (peptidylprolyl isomerase A) [NCBI Gene 5478] {aka CYPA, CYPH, HEL-S-69p}, Nfkb1 (nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105) [NCBI Gene 18033] {aka NF-KB1, NF-kappaB, NF-kappaB1, p105, p50, p50/p105}, TLL2 (tolloid like 2) [NCBI Gene 7093], STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774] {aka ADMIO, ADMIO1, APRF, HIES}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, PTPRC (protein tyrosine phosphatase receptor type C) [NCBI Gene 5788] {aka B220, CD45, CD45R, GP180, IMD105, L-CA}, IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, Il1b (interleukin 1 beta) [NCBI Gene 16176] {aka IL-1beta, Il-1b}, OSMR (oncostatin M receptor) [NCBI Gene 9180] {aka IL-31R-beta, IL-31RB, OSMRB, OSMRbeta, PLCA1}, Egf (epidermal growth factor) [NCBI Gene 13645], LIF (LIF interleukin 6 family cytokine) [NCBI Gene 3976] {aka CDF, DIA, HILDA, MLPLI}, CNTF (ciliary neurotrophic factor) [NCBI Gene 1270] {aka HCNTF}, PECAM1 (platelet and endothelial cell adhesion molecule 1) [NCBI Gene 5175] {aka CD31, CD31/EndoCAM, GPIIA', PECA1, PECAM-1, endoCAM}, IL1RL1 (interleukin 1 receptor like 1) [NCBI Gene 9173] {aka DER4, FIT-1, IL33R, ST2, ST2L, ST2V}, ALDOB (aldolase, fructose-bisphosphate B) [NCBI Gene 229] {aka ALDB, ALDO2}, OSM (oncostatin M) [NCBI Gene 5008], CD163 (CD163 molecule) [NCBI Gene 9332] {aka M130, MM130, SCARI1}, Acta2 (actin alpha 2, smooth muscle, aorta) [NCBI Gene 11475] {aka 0610041G09Rik, Actvs, SMAalpha, SMalphaA, a-SMA, alphaSMA}, VIM (vimentin) [NCBI Gene 7431], HSPD1 (heat shock protein family D (Hsp60) member 1) [NCBI Gene 3329] {aka CPN60, GROEL, HLD4, HSP-60, HSP60, HSP65}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, GYPA (glycophorin A (MNS blood group)) [NCBI Gene 2993] {aka CD235a, GPA, GPErik, GPSAT, HGpMiV, HGpMiXI}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, RELA (RELA proto-oncogene, NF-kB subunit) [NCBI Gene 5970] {aka AIF3BL3, CMCU, NFKB3, p65}, NETO2 (neuropilin and tolloid like 2) [NCBI Gene 81831] {aka BTCL2, NEOT2}, LRP2 (LDL receptor related protein 2) [NCBI Gene 4036] {aka DBS, GP330, LRP-2}, TLL1 (tolloid like 1) [NCBI Gene 7092] {aka ASD6, TLL}, Col1a1 (collagen, type I, alpha 1) [NCBI Gene 12842] {aka Col1a-1, Cola-1, Cola1, Mov-13, Mov13}, LTA (lymphotoxin alpha) [NCBI Gene 4049] {aka LT, TNFB, TNFSF1, TNLG1E}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, DDR2 (discoidin domain receptor tyrosine kinase 2) [NCBI Gene 4921] {aka DDR2-N, MIG20a, NTRKR3, TKT, TYRO10, WRCN}, Il2 (interleukin 2) [NCBI Gene 16183] {aka Il-2}, IL4 (interleukin 4) [NCBI Gene 3565] {aka BCGF-1, BCGF1, BSF-1, BSF1, IL-4}, IFNA1 (interferon alpha 1) [NCBI Gene 3439] {aka IFL, IFN, IFN-ALPHA, IFN-alphaD, IFNA13, IFNA@}, Pdgfrb (platelet derived growth factor receptor, beta polypeptide) [NCBI Gene 18596] {aka CD140b, PDGFR-1, Pdgfr}, TNFRSF1A (TNF receptor superfamily member 1A) [NCBI Gene 7132] {aka CD120a, FPF, TBP1, TNF-R, TNF-R-I, TNF-R55}, NFKBIA (NFKB inhibitor alpha) [NCBI Gene 4792] {aka EDAID2, IKBA, MAD-3, NFKBI}, IL1RAP (interleukin 1 receptor accessory protein) [NCBI Gene 3556] {aka C3orf13, IL-1RAcP, IL1R3}, Tgfb1 (transforming growth factor, beta 1) [NCBI Gene 21803] {aka TGF-beta1, TGFbeta1, Tgfb, Tgfb-1}
- **Diseases:** obesity (MESH:D009765), PTE (MESH:D053559), cardiomyopathy (MESH:D009202), kidney cancer (MESH:D007680), IgA nephropathy (MESH:D005922), renal fibrotic (MESH:D006030), natural killer cell-mediated cytotoxicity (MESH:D000077428), cardiac and renal fibrosis (MESH:D005355), Inflammation (MESH:D007249), cancer (MESH:D009369), calcification (MESH:D002114), diabetes (MESH:D003920), ventricular rupture (MESH:D012421), ANCA Associated Vasculitis (MESH:D056648), CKD (MESH:D051436), asthma (MESH:D001249), cardiovascular-kidney-metabolic syndrome (MESH:D007674), HF (MESH:D006333), cardiac and renal comorbidly (MESH:D006331), cardiac remodelling (MESH:D020257), x-ray injury (MESH:C562844), sepsis (MESH:D018805), PTEs (MESH:D009375), CRS (MESH:D059347), atherosclerosis (MESH:D050197), end-stage HF (MESH:D007676), infection (MESH:D007239), MI (MESH:D009203), loss of nephron function (MESH:D030321)
- **Chemicals:** SDS (MESH:D012967), paraffin (MESH:D010232), EDTA (MESH:D004492), streptomycin (MESH:D013307), aldosterone (MESH:D000450), Triton X-100 (MESH:D017830), CO2 (MESH:D002245), paraformaldehyde (MESH:C003043), LPS (MESH:D008070), PVDF (MESH:C024865), PBS (MESH:D007854), TBS-T (MESH:C027647), Tween-20 (MESH:D011136), reactive oxygen species (MESH:D017382), DAPI (MESH:C007293), formalin (MESH:D005557), DMEM/F12 (-), penicillin (MESH:D010406)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** E5510S, AUC of 0
- **Cell lines:** PTE — Homo sapiens (Human), Conditionally immortalized cell line (CVCL_W184), fibroblasts — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0594), LentiCas9 — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_RG56), HF — Epinephelus awoara (Yellow grouper), Spontaneously immortalized cell line (CVCL_S932), C57BL/6 — Mus musculus (Mouse), Transformed cell line (CVCL_C0MU)

## Full text

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## Figures

10 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12917609/full.md

## References

53 references — full list in the complete paper: https://tomesphere.com/paper/PMC12917609/full.md

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Source: https://tomesphere.com/paper/PMC12917609