# The adenylate cyclase-mediated signaling pathway required for regulating siderophore and toxin biosynthesis and pathogenicity in Alternaria alternata

**Authors:** Kai-Chu Huang, Hsin-Yu Lu, Celine Yen Ling Choo, Pei-Ching Wu, Kuang-Ren Chung

PMC · DOI: 10.3389/ffunb.2026.1766476 · Frontiers in Fungal Biology · 2026-02-05

## TL;DR

This study shows that the adenylate cyclase in the fungus Alternaria alternata is crucial for iron uptake, toxin production, and causing disease.

## Contribution

The study identifies the adenylate cyclase (AaAC) as a key regulator of iron homeostasis, toxin biosynthesis, and pathogenicity in A. alternata.

## Key findings

- Deletion of AaAC impairs siderophore secretion and ACT toxin production, reducing virulence.
- AaAC deletion causes widespread gene expression changes, especially in iron and toxin-related pathways.
- AaAC negatively regulates autophagy under nutrient-rich conditions, affecting energy preservation.

## Abstract

The role of cyclic AMP–protein kinase A (PKA) signaling in siderophore-mediated iron uptake and its connection to virulence remains poorly understood in phytopathogenic fungi. Genetic studies demonstrate that the A. alternata adenylate cyclase (AaAC) regulates diverse cellular processes, including growth, conidiation, iron homeostasis, autophagy, siderophore biosynthesis, and toxin production. Deletion of AaAC results in impaired siderophore secretion, disrupted expression of iron-responsive genes, and a complete loss of ACT toxin biosynthesis, leading to markedly reduced virulence. Transcriptomic analysis under iron-deficient conditions reveals that AaAC deletion induces widespread changes in gene expression, notably the downregulation of genes involved in siderophore biosynthesis and ACT toxin production. These findings indicate that AaAC regulates metabolic pathways essential for fungal survival and pathogenicity. Mutants lacking the GTP-binding protein alpha subunit (Gα), the PKA catalytic subunit, or its regulatory subunit also reduce siderophore production. The findings suggest that environmental cues influencing siderophore biosynthesis are transmitted via a signaling cascade from Gα to AaAC and then to PKA. Additionally, AaAC negatively affects autophagy under nutrient-rich conditions. Gene ontology analysis reveals upregulation of autophagy-related genes, suggesting that AaAC may contribute to cellular energy preservation and physiological stability. These results indicate that AaAC is a key integrator of environmental signals, vital for maintaining iron homeostasis, controlling toxin biosynthesis, and driving virulence in A. alternata.

## Linked entities

- **Genes:** AGA (aspartylglucosaminidase) [NCBI Gene 175]
- **Chemicals:** cyclic AMP (PubChem CID 6076)
- **Species:** Alternaria alternata (taxon 5599)

## Full-text entities

- **Genes:** cytochrome P450 monooxygenase [NCBI Gene 29108734], ferric reductase [NCBI Gene 29116005], hydroxymethylglutaryl-CoA synthase [NCBI Gene 29110059], ferric-chelate reductase [NCBI Gene 29113475], monothiol glutaredoxin-like protein 4 [NCBI Gene 29120737], iron-sulfur cluster assembly protein-like protein 1 [NCBI Gene 29114363], non-ribosomal peptide synthetase [NCBI Gene 29120412], ornithine aminotransferase [NCBI Gene 29119969], arginase [NCBI Gene 29111612]
- **Diseases:** infection (MESH:D007239), PDA (MESH:D004374), toxicity (MESH:D064420), Alternaria brown spot disease (MESH:D002095), Fungal (MESH:D009181), necrosis (MESH:D009336), iron overload (MESH:D019190), necrotic lesions (MESH:D009059), metabolic dysfunction (MESH:D008659), iron deficiency (MESH:D000090463)
- **Chemicals:** H2O2 (MESH:D006861), ACT (-), BPS (MESH:C017049), Ornithine (MESH:D009952), DIG (MESH:D004076), dUTP (MESH:C027078), amino acid (MESH:D000596), rhizoferrin (MESH:C087496), Congo red (MESH:D003224), arginine (MESH:D001120), Amberlite XAD-16 (MESH:C074337), ATP (MESH:D000255), lipid (MESH:D008055), ROS (MESH:D017382), proline (MESH:D011392), nitrogen (MESH:D009584), hygromycin (MESH:C026273), agar (MESH:D000362), FeCl3 (MESH:C024555), tricarboxylic acid (MESH:D014233), CAS (MESH:C015076), water (MESH:D014867), Iron (MESH:D007501), acetyl-CoA (MESH:D000105), S-Adenosyl-L-methionine (MESH:D012436), Ponceau S (MESH:C032756), aflatoxin (MESH:D000348), sulfonylurea (MESH:D013453)
- **Species:** Solanum lycopersicum (tomato, species) [taxon 4081], Aspergillus flavus (species) [taxon 5059], Daucus carota (carrot, species) [taxon 4039], Homo sapiens (human, species) [taxon 9606], Alternaria alternata (species) [taxon 5599], Solanum tuberosum (potatoes, species) [taxon 4113], Brassica oleracea var. botrytis (cauliflower, varietas) [taxon 3715], Brassica oleracea var. italica (asparagus broccoli, varietas) [taxon 36774], Oryza sativa (Asian cultivated rice, species) [taxon 4530], Mucor lusitanicus (species) [taxon 29924], Malus domestica (apple, species) [taxon 3750], Fragaria x ananassa (strawberry, species) [taxon 3747], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Pyrus communis (pear, species) [taxon 23211], Citrus (genus) [taxon 2706], Penicillium digitatum (species) [taxon 36651], Fungi (kingdom) [taxon 4751]
- **Cell lines:** KAH6839898.1 — Oryctolagus cuniculus (Rabbit), Finite cell line (CVCL_XH14), DeltaAaAC_D27 — Mus musculus (Mouse), Hybridoma (CVCL_C5HZ), EV-MIL31 — Mus musculus (Mouse), Hybridoma (CVCL_6G47)

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12916706/full.md

## References

66 references — full list in the complete paper: https://tomesphere.com/paper/PMC12916706/full.md

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Source: https://tomesphere.com/paper/PMC12916706