# Establishment of a Large‐Scale PDX Library of Head and Neck Cancers for Functional Precision Oncology

**Authors:** Hisano Yanagi, Tomoki Kuki, Tetsuya Takimoto, Miki Takabayashi, Seiji Yamada, Chikako Yagi, Yoshitake Kiryu, Maki Kurimoto, Miho Ishikawa, Arisa Yoshida, Yasuyoshi Mizutani, Atsushi Enomoto, Motoshi Suzuki, Kenji Kawada, Hisayuki Kato, Ichiro Tateya, Hideyuki Saya, Takashi Watanabe

PMC · DOI: 10.1002/cam4.71521 · Cancer Medicine · 2026-02-18

## TL;DR

Researchers created a large PDX library for head and neck cancers to improve precision oncology by combining genetic and functional data.

## Contribution

The establishment of the Fujita Xenograft Library (FXeL), a large-scale PDX library for head and neck cancers with detailed clinical annotations.

## Key findings

- Advanced clinical stage was significantly associated with successful engraftment of PDX models.
- Genomic profiles of PDXs largely preserved major cancer-related mutations despite clonal evolution during engraftment.
- PDX responses to cisplatin closely mirrored clinical outcomes of patients, validating their utility for drug testing.

## Abstract

Precision oncology leverages the molecular and genetic characteristics of tumors to enable accurate diagnosis and effective treatment selection. However, recent clinical trials have highlighted the limitations of current approaches and underscored the need to integrate static molecular profiling with functional analyses using patient‐derived xenograft (PDX) models—particularly for cancers such as head and neck cancer (HNC), where driver mutations are rare and prognosis remains poor.

Here, we aimed to establish a large‐scale PDX library for HNC, termed the Fujita Xenograft Library (FXeL), annotated with detailed clinical information. Since 2022, tumor specimens from over 100 surgical cases at Fujita Health University Hospital have been transplanted into immunodeficient mice, resulting in the successful establishment of 62 PDX models.

Advanced clinical stage was significantly associated with successful engraftment, and serial passaging led to progressively accelerated tumor growth. Comparative analyses of genomic profiles between patient tumors and PDXs demonstrated that major cancer‐related mutations were largely preserved in PDXs, while clonal selection and evolution occurred during engraftment. Histopathological features, including keratinization and nuclear atypia, were retained, whereas stromal components such as cancer‐associated fibroblasts exhibited compositional shifts. Furthermore, drug sensitivity assays revealed that PDX responses to cisplatin (CDDP) closely mirrored the clinical outcomes of the corresponding patients.

The FXeL represents a robust and scalable platform for investigating HNC biology and therapeutic response. Despite limitations such as stromal remodeling and the absence of an immune microenvironment, these models provide valuable translational insights and support the advancement of functional precision oncology.

FXeL (Fujita Xenograft Library), a large‐scale PDX library of head and neck cancers for functional precision oncology, we have established over 60 cases from 100 tumor specimens including rare cancers.

## Linked entities

- **Chemicals:** cisplatin (PubChem CID 5460033), CDDP (PubChem CID 5460033)
- **Diseases:** head and neck cancer (MONDO:0005627)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** ISLR (immunoglobulin superfamily containing leucine rich repeat) [NCBI Gene 3671] {aka HsT17563, Meflin}, Rag2 (recombination activating gene 2) [NCBI Gene 19374] {aka Rag-2}, APC (APC regulator of Wnt signaling pathway) [NCBI Gene 324] {aka BTPS2, DESMD, DP2, DP2.5, DP3, GS}, NOTCH1 (notch receptor 1) [NCBI Gene 4851] {aka AOS5, AOVD1, TAN1, hN1}, TENM1 (teneurin transmembrane protein 1) [NCBI Gene 10178] {aka ODZ1, ODZ3, TEN-M1, TEN1, TNM, TNM1}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, CDKN2A (cyclin dependent kinase inhibitor 2A) [NCBI Gene 1029] {aka ARF, CAI2, CDK4I, CDKN2, CMM2, INK4}, PIK3CA (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) [NCBI Gene 5290] {aka CCM4, CLAPO, CLOVE, CWS5, HMH, MCAP}, ACTA2 (actin alpha 2, smooth muscle) [NCBI Gene 59] {aka ACTSA, SMDYS}, Jak3 (Janus kinase 3) [NCBI Gene 16453] {aka fae, wil}
- **Diseases:** PDX (MESH:C536408), HNC (MESH:D006258), oropharyngeal (MESH:D009959), CAF (MESH:D009369), dyskeratosis (MESH:C565079), immunodeficient (MESH:D007153), hypopharyngeal (MESH:D007012), VAF (MESH:D006316), Head-Neck Squamous Cell Carcinoma (MESH:D000077195), salivary gland cancer (MESH:D012468), squamous cell carcinoma (MESH:D002294), Necrotic (MESH:D009336), laryngeal cancers (MESH:D007822), dislocation (MESH:D004204), Oral cancer (MESH:D009062), triple-negative breast cancer (MESH:D064726), Lymphoma (MESH:D008223)
- **Chemicals:** cetuximab (MESH:D000068818), hematoxylin (MESH:D006416), midazolam (MESH:D008874), medetomidine hydrochloride (MESH:D020926), paraffin (MESH:D010232), platinum (MESH:D010984), CDDP (MESH:D002945), APU22132-MD7-CH1 (-), Formalin (MESH:D005557), Cancidas (MESH:D000077336), PBS (MESH:D007854), eosin (MESH:D004801), isoflurane (MESH:D007530), butorphanol tartrate (MESH:D002077)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** Balb/c — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0184), FXeL — Homo sapiens (Human), Pancreatic ductal adenocarcinoma, Cancer cell line (CVCL_0186), HN28 — Homo sapiens (Human), Laryngeal squamous cell carcinoma, Cancer cell line (CVCL_RK45), BRJ — Mus musculus (Mouse), Mouse kidney carcinoma, Cancer cell line (CVCL_3575)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12916448/full.md

## References

33 references — full list in the complete paper: https://tomesphere.com/paper/PMC12916448/full.md

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Source: https://tomesphere.com/paper/PMC12916448