# Biomarker understanding first lessons from drug development for IgA-driven autoimmune and fibrotic diseases

**Authors:** Myrthe Alexandra Maria van Delft, Aleksandra Cegiel, Marjolein van Egmond, Louis Boon, Bohdana Doskaliuk, Victoria Serelli-Lee, Bohdana Doskaliuk

PMC · DOI: 10.1017/pcm.2025.10005 · Cambridge Prisms: Precision Medicine · 2025-11-27

## TL;DR

This paper discusses how biomarkers can improve drug development for IgA-driven autoimmune and fibrotic diseases by enabling patient selection and reducing clinical trial costs.

## Contribution

The paper introduces a novel strategy for identifying biomarkers early in drug development to guide patient stratification and therapeutic target selection.

## Key findings

- Using autoantigen-specific assays to measure autoantibody serum levels can aid in patient stratification.
- Early identification of biomarkers reduces clinical development costs and improves patient outcomes.
- The approach was successfully applied to select an anti-CD89 antagonist monoclonal antibody.

## Abstract

The concept of personalized medicine and its significant benefits for patients and society was introduced over three decades ago. The Human Genome Project (initiated in 1990 and completed in 2003) greatly accelerated the development of precision medicine. In many cancers, defined biomarkers are used to select patients for therapy. For example, KRAS mutations are used to guide treatment with Sotorasib, while tumor expression of (wild type) human epidermal growth factor receptor 2 and 3 (HER2 and HER3) are used to select patients for trastuzumab and cetuximab, respectively. Nonetheless, the clinical adoption of companion diagnostics to facilitate a patient-centric approach in inflammatory diseases remains disappointing. One key reason why the development of companion diagnostics may be delayed autoimmune and fibrotic diseases can be the timing when clinical development teams inform R&D teams about relevant biomarkers or companion diagnostic to select patients, disease monitoring or treatment termination decisions. For clinical practicality, it is highly preferred to measure a biomarker in the systemic circulation, as blood samples can be obtained relatively easily in most diseases. However, discovering systemic biomarkers during clinical development has proven extremely challenging. Here, we describe an alternative approach, which we have used to select the most appropriate target for IgA driven autoimmune and fibrotic diseases. In this specific context, autoantigen-specific assays to determine autoantibody serum levels are widely available for a variety of indications. A detailed analysis of the biological pathways that affect the biomarker can uncover multiple potential therapeutic targets, allowing selection of the most optimal target from a clinical development perspective. Identification of a relevant biomarker before clinical development is initiated, enabling patient stratification in early clinical studies. Selection of the appropriate patient population based on biomarker presence reduces the number of patients needed and consequently, clinical development costs. Moreover, such a patient stratification approach minimizes the risk of including patients who are unlikely to respond, thereby avoiding unnecessary adverse events. This approach was applied during the selection of an anti-CD89 antagonist monoclonal antibody for IgA-mediated autoimmune and fibrotic diseases, serving as an illustrative example of this novel strategy.

## Linked entities

- **Genes:** KRAS (KRAS proto-oncogene, GTPase) [NCBI Gene 3845]
- **Proteins:** FCAR (Fc alpha receptor), ERBB2 (erb-b2 receptor tyrosine kinase 2), ERBB3 (erb-b2 receptor tyrosine kinase 3)

## Full-text entities

- **Genes:** CRP (C-reactive protein) [NCBI Gene 1401] {aka PTX1}, ERBB3 (erb-b2 receptor tyrosine kinase 3) [NCBI Gene 2065] {aka ErbB-3, FERLK, HER3, LCCS2, MDA-BF-1, VSCN1}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, CD86 (CD86 molecule) [NCBI Gene 942] {aka B7-2, B7.2, B70, BU63, CD28LG2, CD86 v6}, TFRC (transferrin receptor) [NCBI Gene 7037] {aka CD71, IMD46, T9, TFR, TFR1, TR}, DLD (dihydrolipoamide dehydrogenase) [NCBI Gene 1738] {aka DLDD, DLDH, E3, GCSL, LAD, OGDC-E3}, KRAS (KRAS proto-oncogene, GTPase) [NCBI Gene 3845] {aka 'C-K-RAS, C-K-RAS, CFC2, K-RAS2A, K-RAS2B, K-RAS4A}, GAL (galanin and GMAP prepropeptide) [NCBI Gene 51083] {aka ETL8, GAL-GMAP, GALN, GLNN, GMAP}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, MPO (myeloperoxidase) [NCBI Gene 4353], CD14 (CD14 molecule) [NCBI Gene 929], GFAP (glial fibrillary acidic protein) [NCBI Gene 2670] {aka ALXDRD}, CD40 (CD40 molecule) [NCBI Gene 958] {aka Bp50, CDW40, TNFRSF5, p50}, ITGAM (integrin subunit alpha M) [NCBI Gene 3684] {aka CD11B, CR3A, HNA-4, MAC-1, MAC1A, MO1A}, ITGAL (integrin subunit alpha L) [NCBI Gene 3683] {aka CD11A, EV6, HNA-5, LFA-1, LFA1A}, FCER1A (Fc epsilon receptor Ia) [NCBI Gene 2205] {aka FCE1A, FCERIA, FcERI}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, TGM2 (transglutaminase 2) [NCBI Gene 7052] {aka G(h), TG(C), TGC, hTG2, tTG}, APP (amyloid beta precursor protein) [NCBI Gene 351] {aka AAA, ABETA, ABPP, AD1, APPI, CTFgamma}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, C3 (complement C3) [NCBI Gene 718] {aka AHUS5, ARMD9, ASP, C3a, C3b, CPAMD1}, TNFSF13B (TNF superfamily member 13b) [NCBI Gene 10673] {aka BAFF, BLYS, CD257, TALL-1, TALL1, THANK}, IGHE (immunoglobulin heavy constant epsilon) [NCBI Gene 3497] {aka IgE}, CD79A (CD79a molecule) [NCBI Gene 973] {aka IGA, IGAlpha, MB-1, MB1}, FCAR (Fc alpha receptor) [NCBI Gene 2204] {aka CD89, CTB-61M7.2, FcalphaR, FcalphaRI}, IGHA1 (immunoglobulin heavy constant alpha 1) [NCBI Gene 3493] {aka IgA1}, RAG2 (recombination activating 2) [NCBI Gene 5897] {aka RAG-2}, MBP (myelin basic protein) [NCBI Gene 4155], ICAM1 (intercellular adhesion molecule 1) [NCBI Gene 3383] {aka BB2, CD54, P3.58}, CA8 (carbonic anhydrase 8 (inactive)) [NCBI Gene 767] {aka CA-RP, CA-VIII, CALS, CAMRQ3, CARP, SCAR34}, MOG (myelin oligodendrocyte glycoprotein) [NCBI Gene 4340] {aka BTN6, BTNL11, MOGIG2, NRCLP7}, GP2 (glycoprotein 2) [NCBI Gene 2813] {aka ZAP75}, ERBB2 (erb-b2 receptor tyrosine kinase 2) [NCBI Gene 2064] {aka CD340, HER-2, HER-2/neu, HER2, MLN 19, MLN-19}, Igha (immunoglobulin heavy constant alpha) [NCBI Gene 238447] {aka IgA, Igh-2}, CXCL8 (C-X-C motif chemokine ligand 8) [NCBI Gene 3576] {aka GCP-1, GCP1, IL8, LECT, LUCT, LYNAP}, IL6R (interleukin 6 receptor) [NCBI Gene 3570] {aka CD126, HIES5, IL-1Ra, IL-6R, IL-6R-1, IL-6RA}, CD58 (CD58 molecule) [NCBI Gene 965] {aka LFA-3, LFA3, ag3}, SPINK5 (serine peptidase inhibitor Kazal type 5) [NCBI Gene 11005] {aka LEKTI, LETKI, NETS, NS, VAKTI}, MAPT (microtubule associated protein tau) [NCBI Gene 4137] {aka DDPAC, FTD1, FTDP-17, MAPTL, MSTD, MTBT1}, PIGR (polymeric immunoglobulin receptor) [NCBI Gene 5284]
- **Diseases:** atherosclerosis (MESH:D050197), Wegener granulomatosis (MESH:D014890), myelin destruction (MESH:D003711), RA (MESH:D001172), glomerulonephritis (MESH:D005921), autoimmune blistering skin disorder (MESH:D001768), rheumatic and systemic autoimmune diseases (MESH:D012216), swollen joints (MESH:D007592), joint erosion (MESH:D014077), cerebrovascular dysfunction (MESH:D002561), COVID (MESH:D000086382), end-stage renal disease (MESH:D007676), immune abnormalities (MESH:D007154), sarcoidosis (MESH:D012507), CVD (MESH:D002318), IPF (MESH:D054990), Crohn's disease (MESH:D003424), hepatic encephalopathy (MESH:D006501), liver pathologies (MESH:D017093), dementia (MESH:D003704), beta-amyloid (MESH:C000718787), IBD (MESH:D015212), experimental autoimmune encephalomyelitis (MESH:D004681), ALD (MESH:D008108), neuronal death (MESH:D009410), PSC (MESH:D015209), post-COVID-19-fibrosis (MESH:D000094024), Chronic (MESH:D002908), neurological disability (MESH:D009069), axonal damage (MESH:D001480), tissue (MESH:D017695), ulcerative colitis (MESH:D003093), cognitive decline (MESH:D003072), joint destruction (MESH:D008105), MS (MESH:D009103), asthmatic (MESH:D013224), hematuria (MESH:D006417), systemic autoimmune disease (MESH:D020274), fibrosis (MESH:D005355), allergic inflammation (MESH:D007249), Liver diseases (MESH:D008107), IgA vasculitis (MESH:D014657), neurodegeneration (MESH:D019636), mucosal disease (MESH:D004194), lung injury (MESH:D055370), cortical atrophy (MESH:D001284), neuroinflammation (MESH:D000090862), galactose (MESH:D005693), liver cirrhosis (MESH:D008103), CF (MESH:D003550), cancer (MESH:D009369), lupus nephritis (MESH:D008181), gallstones (MESH:D042882), Fibrotic lung diseases (MESH:D008171), NAFLD (MESH:D065626), AD (MESH:D000544), renal failure (MESH:D051437), IgA mediated diseases (MESH:C567355), ankylosing spondylitis (MESH:D013167), COPD (MESH:D029424)
- **Chemicals:** LTB4 (MESH:D007975), ACEi (-), cetuximab (MESH:D000068818), Rituximab (MESH:D000069283), Cladribine (MESH:D017338), Steroids (MESH:D013256), Omalizumab (MESH:D000069444), ROS (MESH:D017382), alemtuzumab (MESH:D000074323), Lecanemab (MESH:C000612089), azathioprine (MESH:D001379), trastuzumab (MESH:D000068878), Ofatumumab (MESH:C527517), methotrexate (MESH:D008727), cyclophosphamide (MESH:D003520), galactose (MESH:D005690), Dapsone (MESH:D003622)
- **Species:** Cercopithecidae (monkey, family) [taxon 9527], Homo sapiens (human, species) [taxon 9606], Cricetinae (hamsters, subfamily) [taxon 10026], Rattus norvegicus (brown rat, species) [taxon 10116], Equus caballus (domestic horse, species) [taxon 9796], Bos taurus (bovine, species) [taxon 9913], Gerbillinae (gerbils, subfamily) [taxon 10045], Escherichia coli (E. coli, species) [taxon 562], Mus musculus (house mouse, species) [taxon 10090], Nicotiana tabacum (American tobacco, species) [taxon 4097]

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12916248/full.md

## References

150 references — full list in the complete paper: https://tomesphere.com/paper/PMC12916248/full.md

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Source: https://tomesphere.com/paper/PMC12916248