# HLA-B27-associated gut microbiota and amino acid perturbations promote ankylosing spondylitis through M1 macrophage activation

**Authors:** Tianwen Huang, Hang Yang, Lingshu Zhang, Xiangpeng Wang, Ye Chen, Huanzi Dai, Kenji Hashimoto, Yubin Luo, Yaoyu Pu, Yi Liu

PMC · DOI: 10.1080/19490976.2026.2630561 · Gut Microbes · 2026-02-16

## TL;DR

This study shows how HLA-B27 and gut bacteria changes lead to ankylosing spondylitis by causing inflammation through M1 macrophages.

## Contribution

The study identifies microbial and metabolic signatures linked to AS and validates a causal role of gut microbiota in disease progression.

## Key findings

- HLA-B27 positivity is associated with altered gut microbiota and amino acid metabolism in AS patients.
- Fecal microbiota transplantation from AS patients induces M1 macrophage activation and disease features in mice.
- Cinnabarinic acid suppresses M1 macrophage polarization via the AhR pathway in AS.

## Abstract

Ankylosing spondylitis (AS) is strongly associated with the human leukocyte antigen B27 (HLA-B27), yet how this genetic risk factor interacts with the gut microbiome remains unclear. We integrated fecal gut microbiota analysis, untargeted metabolomics, and clinical phenotyping in 88 participants, including HLA-B27–positive patients with AS (n = 28), HLA-B27–positive healthy controls (n = 30), and HLA-B27–negative healthy controls (n = 30). HLA-B27 positivity, particularly in AS, was associated with marked alterations in gut microbial composition and metabolic profiles, with forty bacterial species showing progressive disease-related shifts across cohorts. Integrated pathway and metabolomic analyses identified three amino acid–related pathways consistently disrupted in AS: tryptophan metabolism, cysteine metabolism, and pyruvate-centered biosynthesis of branched-chain amino acids, ornithine, and lysine. Correlation network analyses linking differential taxa, metabolites, and clinical indices revealed previously unrecognized microbial and metabolic signatures that robustly distinguished AS from both control groups. To explore causality, fecal microbiota transplantation (FMT) from clinical donors into antibiotic-treated mice recapitulated key disease-relevant features, including impaired intestinal barrier function, systemic inflammation, trabecular bone loss, and polarization of macrophages toward a proinflammatory M1 phenotype. Mechanistic validation identified cinnabarinic acid as a critical microbial-derived metabolite that suppresses M1 macrophage polarization via activation of the aryl hydrocarbon receptor (AhR) pathway and confers protection in the FMT model. Together, these findings support a model in which HLA-B27–associated gut dysbiosis and metabolic reprogramming promote AS pathogenesis through macrophage-mediated inflammation and osteocatabolic signaling, highlighting microbial–metabolic pathways as potential therapeutic targets.

## Linked entities

- **Chemicals:** cinnabarinic acid (PubChem CID 114918)
- **Diseases:** ankylosing spondylitis (MONDO:0005306), AS (MONDO:0007113)

## Full-text entities

- **Genes:** JAK2 (Janus kinase 2) [NCBI Gene 3717] {aka JTK10}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, IDH1 (isocitrate dehydrogenase (NADP(+)) 1) [NCBI Gene 3417] {aka HEL-216, HEL-S-26, IDCD, IDH, IDP, IDPC}, RELA (RELA proto-oncogene, NF-kB subunit) [NCBI Gene 5970] {aka AIF3BL3, CMCU, NFKB3, p65}, Ahr (aryl-hydrocarbon receptor) [NCBI Gene 11622] {aka Ah, Ahh, Ahre, In, bHLHe76}, TJP1 (tight junction protein 1) [NCBI Gene 7082] {aka ZO-1}, LINC02605 (long intergenic non-protein coding RNA 2605) [NCBI Gene 112935892] {aka AS, IL-7, IL-7-AS}, AHCY (adenosylhomocysteinase) [NCBI Gene 191] {aka SAHH, adoHcyase}, NFKBIA (NFKB inhibitor alpha) [NCBI Gene 4792] {aka EDAID2, IKBA, MAD-3, NFKBI}, Acp5 (acid phosphatase 5, tartrate resistant) [NCBI Gene 11433] {aka TRACP, TRAP}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, TUBA1B (tubulin alpha 1b) [NCBI Gene 10376] {aka K-ALPHA-1}, Cd86 (CD86 molecule) [NCBI Gene 56822] {aka B7-2}, CD86 (CD86 molecule) [NCBI Gene 942] {aka B7-2, B7.2, B70, BU63, CD28LG2, CD86 v6}, SLC6A3 (solute carrier family 6 member 3) [NCBI Gene 6531] {aka DAT, DAT1, PKDYS, PKDYS1}, CRP (C-reactive protein) [NCBI Gene 1401] {aka PTX1}, Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, Il10 (interleukin 10) [NCBI Gene 16153] {aka CSIF, If2a, Il-10}, Nos2 (nitric oxide synthase 2, inducible) [NCBI Gene 18126] {aka MAC-NOS, NOS-II, Nos-2, Nos2a, i-NOS, iNOS}, Arg1 (arginase, liver) [NCBI Gene 11846] {aka AI, Arg-1, PGIF}, TNFSF11 (TNF superfamily member 11) [NCBI Gene 8600] {aka CD254, ODF, OPGL, OPTB2, RANKL, TNLG6B}, KYNU (kynureninase) [NCBI Gene 8942] {aka KYNUU, VCRL2}, Csf1 (colony stimulating factor 1 (macrophage)) [NCBI Gene 12977] {aka BAP025, Csfm, MCSF, Mhdabap25, PG-M-CSF, op}, MRC1 (mannose receptor C-type 1) [NCBI Gene 4360] {aka CD206, CLEC13D, CLEC13DL, MMR, MRC1L1, bA541I19.1}, Ifng (interferon gamma) [NCBI Gene 15978] {aka IFN-g, If2f, Ifg}, Mrc1 (mannose receptor, C type 1) [NCBI Gene 17533] {aka CD206, MR}, ARG1 (arginase 1) [NCBI Gene 383], POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, ACP5 (acid phosphatase 5, tartrate resistant) [NCBI Gene 54] {aka HPAP, TRACP5a, TRACP5b, TRAP, TRAcP, TrATPase}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, Il6 (interleukin 6) [NCBI Gene 16193] {aka Il-6}, HLA-B (major histocompatibility complex, class I, B) [NCBI Gene 3106] {aka AS, B-4901, HLAB}, NOS2 (nitric oxide synthase 2) [NCBI Gene 4843] {aka HEP-NOS, INOS, NOS, NOS2A}, Tjp1 (tight junction protein 1) [NCBI Gene 21872] {aka ZO1}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, Il1b (interleukin 1 beta) [NCBI Gene 16176] {aka IL-1beta, Il-1b}, Cd86 (CD86 antigen) [NCBI Gene 12524] {aka B7, B7-2, B7.2, B70, CLS1, Cd28l2}, STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774] {aka ADMIO, ADMIO1, APRF, HIES}, TRAP [NCBI Gene 100187907], AHR (aryl hydrocarbon receptor) [NCBI Gene 196] {aka FVH3, RP85, bHLHe76}, MRAP (melanocortin 2 receptor accessory protein) [NCBI Gene 56246] {aka B27, C21orf61, FALP, GCCD2, MRAP1}, LACC1 (laccase domain containing 1) [NCBI Gene 144811] {aka C13orf31, FAMIN, JUVAR}, IGF1 (insulin like growth factor 1) [NCBI Gene 3479] {aka IGF, IGF-I, IGFI, MGF}
- **Diseases:** liver injury (MESH:D017093), amino-acid deficiencies (MESH:D000592), FMT (MESH:D005242), depression (MESH:D003866), experimental autoimmune encephalomyelitis (MESH:D004681), abdominal distension (MESH:D000007), inflammatory bowel disease (MESH:D015212), granulomatous panuveitis (MESH:D015864), immune dysregulation (OMIM:614878), dislocation (MESH:D004204), primary biliary cirrhosis (MESH:D008105), restricted mobility (MESH:D014086), gut microbiome (MESH:C536735), RA (MESH:D001172), arthritis (MESH:D001168), rheumatic or autoimmune diseases (MESH:D012216), bone loss (MESH:D001847), enthesitis (MESH:D001171), spondylitis (MESH:D013166), immune (MESH:D007154), Crohn's disease (MESH:D003424), infection (MESH:D007239), cardiovascular and cerebrovascular disease (MESH:D002318), diarrhea (MESH:D003967), AS (MESH:D013167), autoimmune disorders (MESH:D001327), major organ system dysfunction (MESH:D009102), low back pain (MESH:D017116), ankylosis (MESH:D000844), metabolic abnormalities (MESH:D008659), osteoarthritis (MESH:D010003), alcohol (MESH:D000437), pain (MESH:D010146), spinal fusion (MESH:D000069337), fibrosis (MESH:D005355), periodontitis (MESH:D010518), Intestinal inflammation (MESH:D007249), gastrointestinal symptoms (MESH:D012817), abdominal pain (MESH:D015746), dysbiosis (MESH:D064806), cancer (MESH:D009369), mental illnesses (MESH:D001523), drug abuse (MESH:D019966)
- **Chemicals:** purine (MESH:C030985), agarose (MESH:D012685), Sedanolide (MESH:C087913), LPS (MESH:D008070), CH-223191 (MESH:C511621), paraformaldehyde (MESH:C003043), Cysteine (MESH:D003545), CO2 (MESH:D002245), ampicillin (MESH:D000667), 3-nonaprenyl-4-hydroxybenzoate (MESH:C008665), SCFA (MESH:D005232), neomycin sulfate (MESH:D009355), glucose (MESH:D005947), L-arabinitol (MESH:C014999), indole (MESH:C030374), DAPI (MESH:C007293), PVDF (MESH:C024865), L-Tryptophan (MESH:D014364), IAA (MESH:C030737), acetate (MESH:D000085), Lysine (MESH:D008239), PBS (MESH:D007854), penicillin (MESH:D010406), glucuronate (MESH:D020723), sugar alcohol (MESH:D013402), Ornithine (MESH:D009952), Tridecanedioic acid (MESH:C094073), HE (MESH:D006371), bile-acid (MESH:D001647), 2-amino-3-methoxybenzoic acid (-), carbohydrate (MESH:D002241), propionate (MESH:D011422), amino acid (MESH:D000596), homocysteine (MESH:D006710), butyrate (MESH:D002087), isoflurane (MESH:D007530), valine (MESH:D014633), leucine (MESH:D007930), water (MESH:D014867), pentose (MESH:D010429), methyl green (MESH:D008739), N-Acetylornithine (MESH:C021951), S-adenosyl-L-homocysteine (MESH:D012435), ethanol (MESH:D000431), kynurenine (MESH:D007737), BCAA (MESH:D000597), Laemmli buffer (MESH:C088816), isoleucyl-valine (MESH:C041115), methanol (MESH:D000432), oligopeptide (MESH:D009842), Pyruvate (MESH:D019289), Ile-Val-Tyr (MESH:C409454), Paraffin (MESH:D010232), streptomycin (MESH:D013307), metronidazole (MESH:D008795), Indole-3-acetamide (MESH:C015950), EDTA (MESH:D004492), CA (MESH:C000483), F12 (MESH:C007782), homoserine (MESH:D006714)
- **Species:** Oryza sativa (Asian cultivated rice, species) [taxon 4530], Centipeda periodontii (species) [taxon 82203], Lachnospiraceae bacterium oral taxon 082 (species) [taxon 712976], Campylobacterales (order) [taxon 213849], Bacillota (clostridial firmicutes, phylum) [taxon 1239], Tannerella sp. (species) [taxon 2382127], Bilophila wadsworthia (species) [taxon 35833], Negativibacillus massiliensis (species) [taxon 1871035], gut metagenome (species) [taxon 749906], Bilophila sp. (species) [taxon 1929485], Geosporobacter ferrireducens (species) [taxon 1424294], Lachnospiraceae bacterium 1_1_57FAA (species) [taxon 658081], Homo sapiens (human, species) [taxon 9606], Eubacterium sp. (species) [taxon 142586], Anaerostipes caccae (species) [taxon 105841], Rattus norvegicus (brown rat, species) [taxon 10116], Phocaeicola plebeius (species) [taxon 310297], Clostridium sp. (species) [taxon 1506], Paraprevotella clara (species) [taxon 454154], Bacteroides luti (species) [taxon 1297750], Blautia sp. (species) [taxon 1955243], Prevotella sp. (species) [taxon 59823], Bacteroidetes bacterium 41-46 (species) [taxon 1895922], Mus musculus (house mouse, species) [taxon 10090], Acidaminococcus (genus) [taxon 904], Cloacibacillus sp. (species) [taxon 2049023]
- **Cell lines:** /6 — Homo sapiens (Human), Tongue squamous cell carcinoma, Cancer cell line (CVCL_5985)

## Full text

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## Figures

10 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12915779/full.md

## References

53 references — full list in the complete paper: https://tomesphere.com/paper/PMC12915779/full.md

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Source: https://tomesphere.com/paper/PMC12915779