# Traceless Regulation of Genetic Circuitry

**Authors:** Gokberk Unal, Martin Fussenegger

PMC · DOI: 10.1002/advs.202519848 · Advanced Science · 2025-12-27

## TL;DR

This paper reviews how physical cues like light and electricity can control genetic circuits without leaving molecular traces, offering precise and flexible regulation for various applications.

## Contribution

The paper provides a comprehensive review of traceless gene switches, highlighting their advantages and challenges in modern synthetic biology.

## Key findings

- Traceless gene switches offer higher specificity and spatiotemporal resolution compared to traditional molecular methods.
- Physical cues like light and electricity are compatible with bioelectronic interfaces, enabling new applications in electrogenetics.
- The review identifies current translational barriers and prospects for traceless switches across multiple disciplines.

## Abstract

The advent of synthetic biology, enabling the construction of synthetic genetic circuitry with designed functionality, has has a revolutionary impact on medicine, agriculture, sustainable energy, and the industrial production of high‐value compounds over the last few decades. Gene switches have an indispensable role as regulators of such systems. Despite the early introduction of chemically inducible switches to regulate genetic circuitry, ‘traceless’ physical cues (e.g., light, heat, sound, magnetism, electricity, and mechanical force) can provide greater specificity, higher spatiotemporal resolution, more flexible switching patterns, and better compatibility with bioelectronic interfaces, which is of particular significance given the rise of electrogenetics. Indeed, traceless gene switches are on a path to become universal biological control ports interfacing physiology with the electronic world. In this review, we discuss the impact, challenges, and prospects of physically inducible, traceless gene switches in the context of recent cutting‐edge applications.

Energy‐based, as opposed to molecular, control offers unprecedented improvements in key circuit parameters. This review summarizes the fundamentals of such traceless switches, categorizes them by trigger modalities, and compares and contrasts distinct advantages as well as shortcomings of each kind. Subsequent sections highlight current translational barriers and outline prospective applications across different disciplines.

## Full-text entities

- **Genes:** NFE2L2 (NFE2 like bZIP transcription factor 2) [NCBI Gene 4780] {aka IMDDHH, NRF2, Nrf-2}, LCT (lactase) [NCBI Gene 3938] {aka LAC, LPH, LPH1}, TRPM8 (transient receptor potential cation channel subfamily M member 8) [NCBI Gene 79054] {aka LTRPC6, LTrpC-6, TRPP8, trp-p8}, CACNA1C (calcium voltage-gated channel subunit alpha1 C) [NCBI Gene 775] {aka CACH2, CACN2, CACNA1C-IT2, CACNL1A1, CCHL1A1, CaV1.2}, KEAP1 (kelch like ECH associated protein 1) [NCBI Gene 9817] {aka INrf2, KLHL19}, XPO1 (exportin 1) [NCBI Gene 7514] {aka CRM-1, CRM1, emb, exp1}, ATF4 (activating transcription factor 4) [NCBI Gene 468] {aka CREB-2, CREB2, TAXREB67, TXREB}, LDB3 (LIM domain binding 3) [NCBI Gene 11155] {aka CMD1C, CMD2L, CMH24, CMPD3, CYPHER, LDB3Z1}, KCNJ2 (potassium inwardly rectifying channel subfamily J member 2) [NCBI Gene 3759] {aka ATFB9, HHBIRK1, HHIRK1, IRK1, KIR2.1, LQT7}, CRY2 (cryptochrome circadian regulator 2) [NCBI Gene 1408] {aka HCRY2, PHLL2}, CXCR6 (C-X-C motif chemokine receptor 6) [NCBI Gene 10663] {aka BONZO, CD186, CDw186, STRL33, TYMSTR}, CDH1 (cadherin 1) [NCBI Gene 999] {aka Arc-1, BCDS1, CD324, CDHE, ECAD, LCAM}, ADA (adenosine deaminase) [NCBI Gene 100] {aka ADA1}, FCER1A (Fc epsilon receptor Ia) [NCBI Gene 2205] {aka FCE1A, FCERIA, FcERI}, OPN4 (opsin 4) [NCBI Gene 94233] {aka MOP}, SLTM (SAFB like transcription modulator) [NCBI Gene 79811] {aka Met}, SLC26A5 (solute carrier family 26 member 5) [NCBI Gene 375611] {aka DFNB61, PRES}, TRPV1 (transient receptor potential cation channel subfamily V member 1) [NCBI Gene 7442] {aka VR1}, ATF6 (activating transcription factor 6) [NCBI Gene 22926] {aka ACHM7, ATF6A, ATP6alpha}, COP1 (COP1 E3 ubiquitin ligase) [NCBI Gene 64326] {aka CFAP78, FAP78, RFWD2, RNF200}, INS (insulin) [NCBI Gene 3630] {aka IDDM, IDDM1, IDDM2, ILPR, IRDN, MODY10}, HSF1 (heat shock transcription factor 1) [NCBI Gene 3297] {aka HSTF1}, XBP1 (X-box binding protein 1) [NCBI Gene 7494] {aka TREB-5, TREB5, XBP-1, XBP2}, PIEZO1 (piezo type mechanosensitive ion channel component 1 (Er blood group)) [NCBI Gene 9780] {aka DHS, ER, FAM38A, LMPH3, LMPHM6, Mib}, HSP90B2P (heat shock protein 90 beta family member 2, pseudogene) [NCBI Gene 7190] {aka GRP94P1, GRP94b, HSP, HSPCP2, TRA1P1, TRAP1}, CRIP3 (cysteine rich protein 3) [NCBI Gene 401262] {aka CRP-3, TLP, TLP-A, h6LIMo}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}
- **Diseases:** cytotoxicity (MESH:D064420), arthritis (MESH:D001168), hemophilia B (MESH:D002836), type 1 diabetes (MESH:D003922), diabetes (MESH:D003920), cancer (MESH:D009369), hereditary disorders (MESH:D009386), fibrosis (MESH:D005355), inflammatory (MESH:D007249), fever (MESH:D005334), neurological disorders (MESH:D009461), metabolic disease (MESH:D008659), phototoxicity (MESH:D017484)
- **Chemicals:** thiamine (MESH:D013831), niacin (MESH:D009525), Na+ (MESH:D012964), silica (MESH:D012822), K+ (MESH:D011188), Ca2+ (-), ROS (MESH:D017382), glucose (MESH:D005947), cobalamin (MESH:D014805), sterol (MESH:D013261), menthol (MESH:D008610), PEG (MESH:D011092), His (MESH:D006639), cAMP (MESH:D000242), cholesterol (MESH:D002784), ferrous oxide (MESH:C034236), water (MESH:D014867)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** C-45 C

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12915179/full.md

## References

160 references — full list in the complete paper: https://tomesphere.com/paper/PMC12915179/full.md

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Source: https://tomesphere.com/paper/PMC12915179