# Structural and functional characterization of the newly identified Photorhabdus laumondii tumor necrosis factor‐like lectin

**Authors:** Filip Melicher, Pavel Dobeš, Jan Komárek, Lukáš Faltinek, Marek Korsák, Petra Sýkorová, Josef Houser, Michaela Wimmerová

PMC · DOI: 10.1111/febs.70293 · The Febs Journal · 2025-10-17

## TL;DR

This paper studies a new lectin from Photorhabdus laumondii bacteria that binds specific sugars and may help the bacteria form a mutualistic relationship with nematodes.

## Contribution

The paper provides the first structural and functional characterization of the Photorhabdus laumondii tumor necrosis factor-like lectin (PLTL).

## Key findings

- PLTL preferentially binds branched histo-blood group oligosaccharides.
- PLTL forms a unique hexameric structure stabilized by disulfide bridges.
- PLTL likely supports the mutualistic relationship between Photorhabdus and nematodes rather than insect interactions.

## Abstract

Photorhabdus bacteria live in mutualistic relationships with Heterorhabditis nematodes, and together, they act as effective insect pathogens. These bacteria produce a diverse array of lectins, sugar‐binding proteins that are believed to play crucial roles in the complex tripartite interaction among Photorhabdus, nematodes, and their insect hosts. One such lectin, Photorhabdus laumondii tumor necrosis factor (TNF)‐like lectin (PLTL), identified in Photorhabdus laumondii subsp. laumondii TTO1, exhibits notable sequence similarity to the N‐terminal domain of the BC2L‐C lectin (BC2L‐CN), a TNF‐like lectin recognized for its specificity toward fucosylated glycans associated with human embryonic stem cells and certain cancers. Through glycan array analysis and surface plasmon resonance, we identified PLTL's binding preference for branched histo‐blood group oligosaccharides. The crystallographic structure of PLTL in complex with the BLeb pentasaccharide reveals a network of direct and water‐mediated hydrogen bonds simultaneously stabilizing the Fucα1‐2 and Galα1‐3 moieties, which define its narrow glycan specificity. A combination of mass spectrometry, protein crystallography, and analytical ultracentrifugation showed a unique hexameric PLTL architecture stabilized by intermolecular disulfide bridges. Our data suggest that PLTL may contribute to the mutualistic relationship between Photorhabdus and its nematode symbiont, Heterorhabditis bacteriophora, rather than playing a role in the interaction with the insect host. This study provides a structural and functional characterization of PLTL, a newly identified member of the TNF‐like lectin family. Comparative analysis with BC2L‐CN highlights both conserved and distinct structural features, suggesting potential applications in glycan recognition‐based diagnostics or biotechnological tools beyond its biological role. Our findings underscore its complex glycan specificity and offer insights into its potential role in Photorhabdus‐nematode symbiosis.

We characterize the PLTL lectin from Photorhabdus laumondii, which adopts a unique TNF‐like fold. Binding assays reveal a preference for branched histo‐blood group oligosaccharides. Protein crystallography uncovers a novel hexameric assembly and identifies key residues involved in carbohydrate recognition. Biological data suggest that PLTL contributes to the mutualistic interaction between P. laumondii and Heterorhabditis nematodes.

## Linked entities

- **Species:** Photorhabdus laumondii (taxon 2218628), Heterorhabditis bacteriophora (taxon 37862)

## Full-text entities

- **Diseases:** cancers (MESH:D009369)
- **Chemicals:** water (MESH:D014867), glycan (MESH:D011134), disulfide (MESH:D004220), branched histo-blood group oligosaccharides (-)
- **Species:** Photorhabdus laumondii (species) [taxon 2218628], Heterorhabditis bacteriophora (species) [taxon 37862], Photorhabdus laumondii subsp. laumondii (subspecies) [taxon 141679], Homo sapiens (human, species) [taxon 9606]

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12914763/full.md

## Figures

12 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12914763/full.md

## References

54 references — full list in the complete paper: https://tomesphere.com/paper/PMC12914763/full.md

---
Source: https://tomesphere.com/paper/PMC12914763