# Pan-cancer analysis of ALK mutation and its association with tumor immunogenicity and the efficacy of immune checkpoint blockade

**Authors:** Zhiyang Huang, Jiajun Chen, Yan Huang, Hong Zhao, Bin Zhao

PMC · DOI: 10.1016/j.gendis.2025.101701 · Genes & Diseases · 2025-05-28

## TL;DR

This study finds that ALK mutations are linked to better survival in cancer patients undergoing immunotherapy, suggesting they could help guide treatment decisions.

## Contribution

The study introduces a nomogram for predicting immunotherapy outcomes and shows ALK mutations enhance tumor immunogenicity.

## Key findings

- ALK mutation is associated with improved overall survival in patients receiving immune checkpoint inhibitors.
- ALK mutation increases immune cell infiltration and tumor immunogenicity.
- A nomogram was developed to estimate 12- and 24-month survival probabilities after immunotherapy.

## Abstract

Anaplastic lymphoma kinase (ALK) plays important roles in tumorigenesis and is involved in tumor immunogenicity through various pathways. Here, we conducted a comprehensive bioinformatic and clinical analysis on the characteristics of pan-cancer ALK mutation and its association with tumor immunity and the efficacy of immune checkpoint blockade. In 2930 patients with 11 tumor types treated with immune checkpoint inhibitors, the mutation of ALK indicated favorable overall survival (hazard ratio = 0.69; 95% confidence interval, 0.57–0.83; p < 0.001). We further developed and validated a nomogram to estimate the 12-month and 24-month survival probabilities after the initiation of immunotherapy. Moreover, multi-omics analysis on both intrinsic and extrinsic immune landscapes revealed that the mutation of ALK could enrich infiltration of immune cells, enhance tumor immunogenicity, and improve immune responses. In conclusion, ALK mutation is associated with promoted cancer immunity and can be treated as a biomarker for favorable outcomes in pan-cancer immune checkpoint blockade. These results have implications for treatment decision-making and developing immunotherapy for personalized care.

## Linked entities

- **Genes:** ALK (ALK receptor tyrosine kinase) [NCBI Gene 238]

## Full-text entities

- **Genes:** IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774] {aka ADMIO, ADMIO1, APRF, HIES}, FGFR4 (fibroblast growth factor receptor 4) [NCBI Gene 2264] {aka CD334, JTK2, TKF}, BATF3 (basic leucine zipper ATF-like transcription factor 3) [NCBI Gene 55509] {aka JDP1, JUNDM1, SNFT}, TAFAZZIN (tafazzin, phospholipid-lysophospholipid transacylase) [NCBI Gene 6901] {aka BTHS, CMD3A, EFE, EFE2, G4.5, LVNCX}, PDCD1 (programmed cell death 1) [NCBI Gene 5133] {aka ADMIO4, AIMTBS, CD279, PD-1, PD1, SLEB2}, HLA-C (major histocompatibility complex, class I, C) [NCBI Gene 3107] {aka D6S204, HLA-JY3, HLAC, HLC-C, MHC, PSORS1}, MAP2K7 (mitogen-activated protein kinase kinase 7) [NCBI Gene 5609] {aka JNKK2, MAPKK7, MEK, MEK 7, MKK7, PRKMK7}, INSR (insulin receptor) [NCBI Gene 3643] {aka CD220, HHF5}, BCR (BCR activator of RhoGEF and GTPase) [NCBI Gene 613] {aka ALL, BCR1, CML, D22S11, D22S662, PHL}, LSM4 (LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated) [NCBI Gene 25804] {aka GRP, YER112W}, TXK (TXK tyrosine kinase) [NCBI Gene 7294] {aka BTKL, PSCTK5, PTK4, RLK, TKL}, CTLA4 (cytotoxic T-lymphocyte associated protein 4) [NCBI Gene 397286], TRBV20OR9-2 (T cell receptor beta variable 20/OR9-2 (non-functional)) [NCBI Gene 6962] {aka CDR3, TCRBV20S2, TCRBV2O, TCRBV2S2O}, IRF4 (interferon regulatory factor 4) [NCBI Gene 3662] {aka IMD131, LSIRF, MUM1, NF-EM5, SHEP8}, YAP1 (Yes1 associated transcriptional regulator) [NCBI Gene 10413] {aka COB1, YAP, YAP-1, YAP2, YAP65, YKI}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, ALK (ALK receptor tyrosine kinase) [NCBI Gene 238] {aka ALK1, CD246, NBLST3}, CTLA4 (cytotoxic T-lymphocyte associated protein 4) [NCBI Gene 1493] {aka ALPS5, CD, CD152, CELIAC3, CTLA-4, GRD4}, TNFRSF8 (TNF receptor superfamily member 8) [NCBI Gene 943] {aka CD30, D1S166E, Ki-1}, MAPK1 (mitogen-activated protein kinase 1) [NCBI Gene 5594] {aka ERK, ERK-2, ERK2, ERT1, MAPK2, NS13}, PDCD1 (programmed cell death 1) [NCBI Gene 100533201], CD274 (CD274 molecule) [NCBI Gene 574058] {aka PDL1}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, SOS1 (SOS Ras/Rac guanine nucleotide exchange factor 1) [NCBI Gene 6654] {aka GF1, GGF1, GINGF, HGF, NS4, SOS-1}, GRB2 (growth factor receptor bound protein 2) [NCBI Gene 2885] {aka ASH, EGFRBP-GRB2, Grb3-3, MST084, MSTP084, NCKAP2}, CYLD (CYLD lysine 63 deubiquitinase) [NCBI Gene 1540] {aka BRSS, CDMT, CYLD1, CYLDI, EAC, FTDALS8}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}
- **Diseases:** melanoma (MESH:D008545), glioma (MESH:D005910), head and neck cancer (MESH:D006258), ALK-rearranged tumors (MESH:D017728), Cancer (MESH:D009369), lung cancer (MESH:D008175), tumorigenesis (MESH:D063646), anal cancer (MESH:D001005), sarcoma (MESH:D012509), colorectal cancer (MESH:D015179), death (MESH:D003643), toxicity (MESH:D064420), breast cancer (MESH:D001943), lymphoma (MESH:D008223), bladder urothelial cancer (MESH:D001749), renal cell carcinoma (MESH:D002292)
- **Chemicals:** ceritinib (MESH:C586847), alectinib (MESH:C582670), crizotinib (MESH:D000077547), lorlatinib (MESH:C000590786), brigatinib (MESH:C000598580), haloalkane (-)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** p. L1196M, G1269A, p. G1202R

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12914538/full.md

## References

34 references — full list in the complete paper: https://tomesphere.com/paper/PMC12914538/full.md

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Source: https://tomesphere.com/paper/PMC12914538