# Artificial intelligence in functional food innovation: Bioactive enhancement and formulation optimization: A quasi-systematic review

**Authors:** Nadia Alkalbani, Leen Shahin, Hiba Benzeghiba, Reyad S. Obaid, Tareq M. Osaili, Leila Cheik Ismail, Ghayah Al qasssimi, Maha Rauf, Khawla Abdulrahim, Afra Almashgouni, Fatima Ashuweihi, Dana AL-Fuqaha

PMC · DOI: 10.1016/j.fochx.2026.103628 · Food Chemistry: X · 2026-02-07

## TL;DR

This paper reviews how AI is used in functional food research, focusing on bioactive compound prediction and formulation optimization.

## Contribution

It highlights the novel use of explainable AI and deep learning in enhancing functional food precision and antioxidant development.

## Key findings

- Explainable AI improves transparency in predicting bioactive compounds.
- Deep learning and omics integration enhance functional food precision.
- Convolutional neural networks are effective for analyzing complex metabolomic data.

## Abstract

Artificial intelligence (AI) is increasingly integrated into functional food research. This quasi-systematic review analyzes 53 peer-reviewed studies (2015–2025) to outline current applications and emerging directions, including the underexplored domain of antioxidant food development. The review attempts to provide an updated synthesis of AI approaches across compound discovery, metabolomics, and consumer modeling, emphasizing knowledge gaps and opportunities for methodological integration. Data-driven AI (classical machine learning) and deep learning methods have been applied to predict antioxidant activity, identify bioactive compounds, and reveal patterns in metabolomic data. Unsupervised approaches have assisted in clustering complex datasets, whereas optimization algorithms supported the adjustment of sensory, nutritional, and functional attributes. However, many current systems remain limited to in silico findings, lacking experimental or clinical validation. Consumer modeling remains largely predictive, with limited integration of ethical and regulatory dimensions. Continued collaboration between food scientists and data scientists is essential for translating computational insights into practical applications.

•A quasi-systematic review of 53 studies on AI in functional food development.•Explainable AI ensures transparency in bioactive compound prediction.•Deep learning and omics integration enhance functional food precision.•Convolutional neural networks excel in analyzing complex metabolomic data.•Microbiota variability challenges AI-based personalized nutrition models.

A quasi-systematic review of 53 studies on AI in functional food development.

Explainable AI ensures transparency in bioactive compound prediction.

Deep learning and omics integration enhance functional food precision.

Convolutional neural networks excel in analyzing complex metabolomic data.

Microbiota variability challenges AI-based personalized nutrition models.

## Full-text entities

- **Genes:** RAPGEF1 (Rap guanine nucleotide exchange factor 1) [NCBI Gene 2889] {aka C3G, GRF2}, FLT3LG (fms related receptor tyrosine kinase 3 ligand) [NCBI Gene 2323] {aka FL, FLG3L, FLT3L, IMD125}
- **Diseases:** IBS (MESH:D053560), diabetes (MESH:D003920), inflammatory (MESH:D007249), noncommunicable diseases (MESH:D000073296), DL (MESH:D007859), FL (MESH:C537032), depressive disorders (MESH:D003866), irritable bowel syndrome (MESH:D043183)
- **Chemicals:** 2,2-diphenyl-1-picrylhydrazyl (MESH:C004931), agar (MESH:D000362), lactose (MESH:D007785), polysaccharides (MESH:D011134), omega-3 fatty acid (MESH:D015525), sugar (MESH:D000073893), salt (MESH:D012492), amylose (MESH:D000688), N-trans-caffeoyltyramine (MESH:C481438), NaCl (MESH:D012965), fat (MESH:D005223), ethanol (MESH:D000431), procyanidin B1 (MESH:C479579), alkaloids (MESH:D000470), inulin (MESH:D007444), (epi)catechin (MESH:D002392), palm oil (MESH:D000073878), peptides (MESH:D010455), hydroxybenzoic acid (MESH:C017616), 2'-fucosyllactose (MESH:C031420), Cyanidin-3-O-rutinoside (MESH:C428983), water (MESH:D014867), carbohydrate (MESH:D002241), fatty acids (MESH:D005227), oil (MESH:D009821), starch (MESH:D013213), sodium (MESH:D012964), L-cystine (MESH:D003553), bile acids (MESH:D001647), Hiba Benzeghiba (-), SCFA (MESH:D005232), calcium (MESH:D002118), Cyanidin-3-O-glucoside (MESH:C462279), glucose (MESH:D005947), flavonoids (MESH:D005419), Anthocyanin (MESH:D000872), OH (MESH:C031356), L-anserine (MESH:D000861), sucrose (MESH:D013395), 2,2'-azinobis (3-ethylbenzothiazoline-6-sulfonic acid) (MESH:C002502), citric acid (MESH:D019343), prebiotics (MESH:D056692), polyphenol (MESH:D059808)
- **Species:** Theobroma cacao (cacao, species) [taxon 3641], Lycium barbarum (Duke of Argyll's teatree, species) [taxon 112863], Cenchrus americanus (bulrush millet, species) [taxon 4543], Allium sativum (garlic, species) [taxon 4682], Prunus pseudocerasus (Chinese sour cherry, species) [taxon 151439], Prunus armeniaca (apricot, species) [taxon 36596], Homo sapiens (human, species) [taxon 9606], Citrus reticulata (mandarin orange, species) [taxon 85571], Corylus (hazelnuts, genus) [taxon 13450], Powellomyces sp. EA (species) [taxon 252690], Prunus tomentosa (downy cherry, species) [taxon 105667], Allium cepa (onion, species) [taxon 4679], Corylus avellana (European hazelnut, species) [taxon 13451], Medicago truncatula (barrel medic, species) [taxon 3880]

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## Figures

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## References

153 references — full list in the complete paper: https://tomesphere.com/paper/PMC12914456/full.md

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Source: https://tomesphere.com/paper/PMC12914456