# Harnessing Ribonucleoprotein Granule Biology for Cancer Therapy: The Central Role of Protein Modifications

**Authors:** Dengxiong Li, Qingxin Yu, Ruicheng Wu, Koo Han Yoo, Dilinaer Wusiman, Jie Wang, Qi Zhang, Dechao Feng

PMC · DOI: 10.34133/research.1133 · Research · 2026-02-18

## TL;DR

This paper explores how protein modifications affect RNP granules in cancer, offering insights for developing new cancer therapies.

## Contribution

The paper highlights the role of various protein modifications in RNP granule biology and their implications for cancer therapy.

## Key findings

- RNPs can undergo phosphorylation, ubiquitination, SUMOylation, methylation, crotonylation, and acetylation.
- Modifications on RNPs influence granule expression and function, impacting cancer treatment efficacy.
- Glycosylation, fucosylation, and PARylation on RNPs remain unreported in cancer research.

## Abstract

Aberrant expression or dysfunction of ribonucleoprotein (RNP) granules usually contribute to cancer initiation, progression, and therapeutic response. In the process, protein modification importantly mediates the interactions between cancer and RNPs/associated proteins. Therefore, we tried to summarize and discuss the complex interactions between RNPs and various protein modifications in cancers, facilitating the clinical translation of RNP-based therapies. Studies have shown that RNPs can directly undergo phosphorylation, ubiquitination, SUMOylation, methylation, crotonylation, and acetylation, but no studies have reported glycosylation, fucosylation, or PARylation on RNPs. These modifications can competitively occur on RNPs, affecting the RNP granule expression and function. Cancer cells, immune cells, and stromal cells can undergo RNP granule modifications, consequently mediating current treatment efficacy. These results provide the basis of RNP granule-based antitumor therapy. However, the structural complexity of RNPs and limited research depth pose significant key for clinical translation.

## Linked entities

- **Proteins:** RNPC3 (RNA binding region (RNP1, RRM) containing 3)
- **Chemicals:** methylation (PubChem CID 637776)
- **Diseases:** cancer (MONDO:0004992)

## Full-text entities

- **Genes:** HDAC3 (histone deacetylase 3) [NCBI Gene 8841] {aka HD3, KDAC3, RPD3, RPD3-2}, PPP2CA (protein phosphatase 2 catalytic subunit alpha) [NCBI Gene 5515] {aka HJS3, NEDLBA, PP2Ac, PP2CA, PP2Calpha, RP-C}, PTPA (protein phosphatase 2 phosphatase activator) [NCBI Gene 5524] {aka PARK25, PP2A, PPP2R4, PR53}, ALYREF (Aly/REF export factor) [NCBI Gene 10189] {aka ALY, ALY/REF, BEF, REF, THOC4}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, TRIM21 (tripartite motif containing 21) [NCBI Gene 6737] {aka RNF81, RO52, Ro/SSA, SSA, SSA1, TRIM21/Ro52}, LINC01232 (long intergenic non-protein coding RNA 1232) [NCBI Gene 102725509] {aka LINC00449, TCONS_00021520}, HNRNPK (heterogeneous nuclear ribonucleoprotein K) [NCBI Gene 3190] {aka AUKS, CSBP, HNRPK, TUNP}, PROX1 (prospero homeobox 1) [NCBI Gene 5629], IGF1R (insulin like growth factor 1 receptor) [NCBI Gene 3480] {aka CD221, IGFIR, IGFR, JTK13}, PCBP1 (poly(rC) binding protein 1) [NCBI Gene 5093] {aka HEL-S-85, HNRPE1, HNRPX, hnRNP-E1, hnRNP-X}, H4C6 (H4 clustered histone 6) [NCBI Gene 8361] {aka H4, H4/c, H4FC, HIST1H4F}, HNRNPH1 (heterogeneous nuclear ribonucleoprotein H1) [NCBI Gene 3187] {aka HNRPH, HNRPH1, NEDCDS, hnRNPH}, MAPK1 (mitogen-activated protein kinase 1) [NCBI Gene 5594] {aka ERK, ERK-2, ERK2, ERT1, MAPK2, NS13}, MAPK8 (mitogen-activated protein kinase 8) [NCBI Gene 5599] {aka JNK, JNK-46, JNK1, JNK1A2, JNK21B1/2, PRKM8}, SENP2 (SUMO specific peptidase 2) [NCBI Gene 59343] {aka AXAM2, SMT3IP2}, SF3B1 (splicing factor 3b subunit 1) [NCBI Gene 23451] {aka Hsh155, MDS, PRP10, PRPF10, SAP155, SF3b155}, CREB1 (cAMP responsive element binding protein 1) [NCBI Gene 1385] {aka CREB, CREB-1}, CTNNB1 (catenin beta 1) [NCBI Gene 1499] {aka CTNNB, EVR7, MRD19, NEDSDV, armadillo}, KRAS (KRAS proto-oncogene, GTPase) [NCBI Gene 3845] {aka 'C-K-RAS, C-K-RAS, CFC2, K-RAS2A, K-RAS2B, K-RAS4A}, MIR503 (microRNA 503) [NCBI Gene 574506] {aka MIRN503, hsa-mir-503, mir-503}, METTL3 (methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit) [NCBI Gene 56339] {aka IME4, M6A, MT-A70, Spo8, hMETTL3}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, VRK1 (VRK serine/threonine kinase 1) [NCBI Gene 7443] {aka HMNR10, PCH1, PCH1A}, PFKFB3 (6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3) [NCBI Gene 5209] {aka IPFK2, PFK2, iPFK-2}, TP53BP1 (tumor protein p53 binding protein 1) [NCBI Gene 7158] {aka 53BP1, TDRD30, p202, p53BP1}, ALOX15 (arachidonate 15-lipoxygenase) [NCBI Gene 246] {aka 12-LOX, 15-LOX, 15-LOX-1, LOG15}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, ANCR (Angelman syndrome chromosome region) [NCBI Gene 282], HNRNPM (heterogeneous nuclear ribonucleoprotein M) [NCBI Gene 4670] {aka CEAR, HNRNPM4, HNRPM, HNRPM4, HTGR1, NAGR1}, SMAD7 (SMAD family member 7) [NCBI Gene 4092] {aka CRCS3, MADH7, MADH8}, ESCO2 (establishment of sister chromatid cohesion N-acetyltransferase 2) [NCBI Gene 157570] {aka 2410004I17Rik, EFO2, EFO2p, JHS, RBS, hEFO2}, FBXO16 (F-box protein 16) [NCBI Gene 157574] {aka FBX16}, lncLBCS [NCBI Gene 115561815], IFI27 (interferon alpha inducible protein 27) [NCBI Gene 3429] {aka FAM14D, ISG12, ISG12A, P27}, MCM3 (minichromosome maintenance complex component 3) [NCBI Gene 4172] {aka HCC5, P1-MCM3, P1.h, RLFB}, HNRNPU (heterogeneous nuclear ribonucleoprotein U) [NCBI Gene 3192] {aka DEE54, EIEE54, GRIP120, HNRNPU-AS1, HNRPU, SAF-A}, LTBP1 (latent transforming growth factor beta binding protein 1) [NCBI Gene 4052] {aka ARCL2E}, STUB1 (STIP1 homology and U-box containing protein 1) [NCBI Gene 10273] {aka CHIP, HSPABP2, NY-CO-7, SCA48, SCAR16, SDCCAG7}, FOXO3 (forkhead box O3) [NCBI Gene 2309] {aka AF6q21, FKHRL1, FKHRL1P2, FOXO2, FOXO3A}, RPS3 (ribosomal protein S3) [NCBI Gene 6188] {aka S3, uS3}, H3P16 (H3 histone pseudogene 16) [NCBI Gene 644914] {aka H3.6, H3F3AP6, p21}, MAPK14 (mitogen-activated protein kinase 14) [NCBI Gene 1432] {aka CSBP, CSBP1, CSBP2, CSPB1, EXIP, Mxi2}, BTRC (beta-transducin repeat containing E3 ubiquitin protein ligase) [NCBI Gene 8945] {aka BETA-TRCP, FBW1A, FBXW1, FBXW1A, FWD1, bTrCP}, CASC11 (cancer susceptibility 11) [NCBI Gene 100270680] {aka CARLO7, CARLo-7, LINC00990, MYMLR, TCONS_00014535}, BRCA1 (BRCA1 DNA repair associated) [NCBI Gene 672] {aka BRCAI, BRCC1, BROVCA1, FANCS, IRIS, PNCA4}, PIAS1 (protein inhibitor of activated STAT 1) [NCBI Gene 8554] {aka DDXBP1, GBP, GU/RH-II, ZMIZ3}, NXF1 (nuclear RNA export factor 1) [NCBI Gene 10482] {aka MEX67, TAP}, CAND1 (cullin associated and neddylation dissociated 1) [NCBI Gene 55832] {aka TIP120, TIP120A}, DDX17 (DEAD-box helicase 17) [NCBI Gene 10521] {aka P72, RH70}, HIF1A (hypoxia inducible factor 1 subunit alpha) [NCBI Gene 3091] {aka HIF-1-alpha, HIF-1A, HIF-1alpha, HIF1, HIF1-ALPHA, MOP1}, DDX39B (DExD-box helicase 39B) [NCBI Gene 7919] {aka BAT1, D6S81E, UAP56}, GALNT16 (polypeptide N-acetylgalactosaminyltransferase 16) [NCBI Gene 57452] {aka GALNACT16, GALNTL1, GalNAc-T16}, HSPA5 (heat shock protein family A (Hsp70) member 5) [NCBI Gene 3309] {aka BIP, GRP78, HEL-S-89n}, CCND1 (cyclin D1) [NCBI Gene 595] {aka BCL1, D11S287E, PRAD1, U21B31}, CRNDE (colorectal neoplasia differentially expressed) [NCBI Gene 643911] {aka CRNDEP, LINC00180, NCRNA00180, PNAS-108, lincIRX5}, USP7 (ubiquitin specific peptidase 7) [NCBI Gene 7874] {aka C16DELp13.2, DEL16P13.2, HAFOUS, HAUSP, TEF1}, HNRNPA2B1 (heterogeneous nuclear ribonucleoprotein A2/B1) [NCBI Gene 3181] {aka HNRNPA2, HNRNPB1, HNRPA2, HNRPA2B1, HNRPB1, IBMPFD2}, LYPD3 (LY6/PLAUR domain containing 3) [NCBI Gene 27076] {aka C4.4A}, MDM2 (MDM2 proto-oncogene) [NCBI Gene 4193] {aka ACTFS, HDMX, LSKB, hdm2}
- **Diseases:** colorectal (MESH:D015179), metastasis (MESH:D009362), toxicity (MESH:D064420), ovarian cancer (MESH:D010051), breast cancer (MESH:D001943), bladder cancer lymph node metastasis (MESH:D008207), prostate tumorigenesis (MESH:D011472), clear cell renal carcinoma (MESH:D002292), bladder cancer (MESH:D001749), hepatocellular cancer (MESH:D006528), pancreatic cancer (MESH:D010190), cervical cancer (MESH:D002583), prostate cancer (MESH:D011471), melanoma (MESH:D008545), pancreatic ductal adenocarcinoma (MESH:D021441), Cancer (MESH:D009369), lung cancer (MESH:D008175), cholangiocarcinoma (MESH:D018281), carcinogenesis (MESH:D063646), gastric cancer (MESH:D013274), head and neck squamous cell carcinoma (MESH:D000077195), acute myeloid leukemia (MESH:D015470)
- **Chemicals:** doxorubicin (MESH:D004317), cisplatin (MESH:D002945), lipid (MESH:D008055), m6A (MESH:C005955), reactive oxygen species (MESH:D017382), gemcitabine (MESH:D000093542), lysine (MESH:D008239), N6-methyladenosine (MESH:C010223), THZ531 (MESH:C000618758), glycans (MESH:D011134), lactate (MESH:D019344), Niclosamide (MESH:D009534), oxaliplatin (MESH:D000077150)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** HeLa — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_0030)

## Full text

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## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12914060/full.md

## References

121 references — full list in the complete paper: https://tomesphere.com/paper/PMC12914060/full.md

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Source: https://tomesphere.com/paper/PMC12914060