# Exogenous Epstein–Barr virus nuclear antigen 1 induces ADAR1-driven tumor resistance against immunotherapy

**Authors:** Changlin Liu, Zhiqiang Sun, Chao Li, Yanqing Zhou, Xuefeng Gao, Yuping Zhong, Xiaomin Luo, Chenci Wang, Yuanbin Zhang, Chuping Ni, Manli Peng, Weiquan Jian, Yinggui Yang, Xuewen Zhang, Yichang Ren, Xinqi Gong, Min Zhao, Xia Guo, Chao Cheng, Jianjun Chen, Xin Li

PMC · DOI: 10.1038/s41392-026-02574-y · Signal Transduction and Targeted Therapy · 2026-02-18

## TL;DR

This study shows how a virus protein, EBNA1, helps tumors resist immunotherapy by boosting RNA editing, and targeting EBNA1 could make tumors more responsive to treatment.

## Contribution

The study reveals a novel mechanism by which EBNA1 exploits ADAR1 to suppress immune responses and suggests targeting EBNA1 as a strategy to improve immunotherapy outcomes.

## Key findings

- EBNA1 overexpression reduces CD8+ T-cell infiltration and inhibits IFN responses in tumor models.
- EBNA1 forms a complex with IGF2BP3 and EIF4G1 to enhance ADAR1 translation and RNA editing.
- Combining EBNA1-targeting PROTAC with anti-PD-1 therapy restores IFN signaling and suppresses tumor growth in mice.

## Abstract

Immune checkpoint blockade (ICB) therapy continues to face limitations due to tumor resistance linked to suppressed interferon (IFN) signaling. This suppression can be attributed to multiple mechanisms, among which viral pathogens represent a compelling though not yet fully elucidated factor. Here, we demonstrate that exogenous Epstein–Barr virus-encoded EBNA1 drives immunosuppression via enhanced RNA-editing enzyme ADAR1-mediated RNA editing. Comparative tumor model analyses revealed that EBNA1 overexpression reduced CD8+ T-cell infiltration, inhibited IFN responses, polarized macrophages toward the M2 phenotype, and accelerated tumor growth. Mechanistically, EBNA1 forms a trimeric complex with insulin-like growth factor 2 mRNA-binding protein 3 (IGF2BP3) and eukaryotic translation initiation factor 4G1 (EIF4G1), enhancing ADAR1 translation. Elevated ADAR1 further increased A-to-I editing of dsRNA, particularly within SINE elements near IFN-associated genes. This editing masked immunostimulatory signals, impairing RNA sensor activation and blunting IFN pathways. Notably, combining the EBNA1-targeting PROTAC degrader EP-1215 with anti-PD-1 effectively restored IFN signaling, enhanced T-cell infiltration, and suppressed EBNA1+ tumors in humanized mice. This viral exploitation of RNA editing suggests that targeting EBNA1 could be a strategy to convert “cold” tumors into “hot” targets amenable to ICB therapy.

## Linked entities

- **Genes:** EBNA-1 (protein-coding) [NCBI Gene 3783709], ADAR (adenosine deaminase RNA specific) [NCBI Gene 103], IGF2BP3 (insulin like growth factor 2 mRNA binding protein 3) [NCBI Gene 10643], EIF4G1 (eukaryotic translation initiation factor 4 gamma 1) [NCBI Gene 1981]
- **Proteins:** EBNA-1 (protein-coding), ADAR (adenosine deaminase RNA specific), IGF2BP3 (insulin like growth factor 2 mRNA binding protein 3), EIF4G1 (eukaryotic translation initiation factor 4 gamma 1)

## Full-text entities

- **Genes:** NOS2 (nitric oxide synthase 2) [NCBI Gene 4843] {aka HEP-NOS, INOS, NOS, NOS2A}, RRM2 (ribonucleotide reductase regulatory subunit M2) [NCBI Gene 6241] {aka C2orf48, R2, RR2, RR2M}, UBE2L6 (ubiquitin conjugating enzyme E2 L6) [NCBI Gene 9246] {aka RIG-B, UBCH8}, ADAR (adenosine deaminase RNA specific) [NCBI Gene 103] {aka ADAR1, AGS6, DRADA, DSH, DSRAD, G1P1}, IDO1 (indoleamine 2,3-dioxygenase 1) [NCBI Gene 3620] {aka IDO, IDO-1, INDO}, Ifng (interferon gamma) [NCBI Gene 15978] {aka IFN-g, If2f, Ifg}, CMPK2 (cytidine/uridine monophosphate kinase 2) [NCBI Gene 129607] {aka IBGC10, NDK, TMPK2, TYKi, UMP-CMPK2}, OAS3 (2'-5'-oligoadenylate synthetase 3) [NCBI Gene 4940] {aka p100, p100OAS}, LGALS9 (galectin 9) [NCBI Gene 3965] {aka HUAT, LGALS9A}, Ifnb1 (interferon beta 1, fibroblast) [NCBI Gene 15977] {aka IFN-beta, IFNB, If1da1, Ifb}, Igf2bp3 (insulin-like growth factor 2 mRNA binding protein 3) [NCBI Gene 140488] {aka 2610101N11Rik, IMP-3, IMP3, Koc13, Neilsen, mimp3}, IL12B (interleukin 12B) [NCBI Gene 3593] {aka CLMF, CLMF2, IL-12B, IMD28, IMD29, NKSF}, ARG1 (arginase 1) [NCBI Gene 383], GPM6A (glycoprotein M6A) [NCBI Gene 2823] {aka GPM6, M6A}, Eif4g1 (eukaryotic translation initiation factor 4, gamma 1) [NCBI Gene 208643] {aka E030015G23Rik, eIF-4-gamma 1, eIF-4G 1, eIF-4G1, eIF4GI}, MAVS (mitochondrial antiviral signaling protein) [NCBI Gene 57506] {aka CARDIF, IPS-1, IPS1, VISA}, HSH2D (hematopoietic SH2 domain containing) [NCBI Gene 84941] {aka ALX, HSH2}, PDCD1 (programmed cell death 1) [NCBI Gene 5133] {aka ADMIO4, AIMTBS, CD279, PD-1, PD1, SLEB2}, RIGI (RNA sensor RIG-I) [NCBI Gene 23586] {aka DDX58, RIG-I, RIG1, RLR-1, SGMRT2}, IFIH1 (interferon induced with helicase C domain 1) [NCBI Gene 64135] {aka AGS7, Hlcd, IDDM19, IMD95, MDA-5, MDA5}, IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, HERC6 (HECT and RLD domain containing E3 ubiquitin protein ligase family member 6) [NCBI Gene 55008], Usp7 (ubiquitin specific peptidase 7) [NCBI Gene 252870] {aka 2210010O09Rik, Hausp}, SP100 (SP100 nuclear body protein) [NCBI Gene 6672] {aka lysp100b}, IGF2BP1 (insulin like growth factor 2 mRNA binding protein 1) [NCBI Gene 10642] {aka CRD-BP, CRDBP, IMP-1, IMP1, VICKZ1, ZBP1}, EBNA1 [NCBI Gene 17494214], Hk1 (hexokinase 1) [NCBI Gene 15275] {aka Hk-1, Hk1-s, dea, mHk1-s}, IFNA1 (interferon alpha 1) [NCBI Gene 3439] {aka IFL, IFN, IFN-ALPHA, IFN-alphaD, IFNA13, IFNA@}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, EIF2AK2 (eukaryotic translation initiation factor 2 alpha kinase 2) [NCBI Gene 5610] {aka PKR, PPP1R83, PRKR}, IFNB1 (interferon beta 1) [NCBI Gene 3456] {aka IFB, IFF, IFN-beta, IFNB}, GZMB (granzyme B) [NCBI Gene 3002] {aka C11, CCPI, CGL-1, CGL1, CSP-B, CSPB}, IGF2BP3 (insulin like growth factor 2 mRNA binding protein 3) [NCBI Gene 10643] {aka CT98, IMP-3, IMP3, KOC, KOC1, VICKZ3}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, Cd34 (CD34 antigen) [NCBI Gene 12490], KCNF1 (potassium voltage-gated channel modifier subfamily F member 1) [NCBI Gene 3754] {aka IK8, KCNF, KV5.1, kH1}, IGF2BP2 (insulin like growth factor 2 mRNA binding protein 2) [NCBI Gene 10644] {aka IMP-2, IMP2, VICKZ2}, Ptprc (protein tyrosine phosphatase receptor type C) [NCBI Gene 19264] {aka B220, CD45R, Cd45, L-CA, Ly-5, Lyt-4}, IFIT3 (interferon induced protein with tetratricopeptide repeats 3) [NCBI Gene 3437] {aka CIG-49, GARG-49, IFI60, IFIT4, IRG2, ISG60}, Gpt (glutamic pyruvic transaminase, soluble) [NCBI Gene 76282] {aka 1300007J06Rik, 2310022B03Rik, ALT, ALT1, Gpt-1, Gpt1}, A1cf (APOBEC1 complementation factor) [NCBI Gene 69865] {aka 1810073H04Rik, 9130016M20Rik, ACF64, ACF65, ASP, Acf}, RRM1 (ribonucleotide reductase catalytic subunit M1) [NCBI Gene 6240] {aka PEOB6, R1, RIR1, RR1}, DHX58 (DExH-box helicase 58) [NCBI Gene 79132] {aka D11LGP2, D11lgp2e, LGP2, RLR-3}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, Adar (adenosine deaminase, RNA-specific) [NCBI Gene 56417] {aka Adar1, Adar1p110, Adar1p150, DRADA, mZaADAR}, LAG3 (lymphocyte activating 3) [NCBI Gene 3902] {aka CD223}, EIF4G1 (eukaryotic translation initiation factor 4 gamma 1) [NCBI Gene 1981] {aka EIF-4G1, EIF4F, EIF4G, EIF4GI, P220, PARK18}, HNRNPK (heterogeneous nuclear ribonucleoprotein K) [NCBI Gene 3190] {aka AUKS, CSBP, HNRPK, TUNP}
- **Diseases:** colon carcinoma (MESH:D003110), tumorigenesis (MESH:D063646), Gastric Cancer (MESH:D013274), head and neck cancer (MESH:D006258), cancer (MESH:D009369), B16 melanoma (MESH:D008546), inflammatory (MESH:D007249), EBV (MESH:D020031), melanoma (MESH:D008545), infectious disease (MESH:D003141), NPC (MESH:D000077274), necrosis (MESH:D009336), chronic rhinitis (MESH:D012220), lymphoma (MESH:D008223), cytotoxicity (MESH:D064420), infection (MESH:D007239), mycoplasma (MESH:D009175), viral infection (MESH:D014777), NPE (MESH:D009375)
- **Chemicals:** insulin (MESH:D007328), streptomycin (MESH:D013307), Poly I:C (MESH:D011070), DMSO (MESH:D004121), DAPI (MESH:C007293), PBS (MESH:D007854), CO2 (MESH:D002245), Chromium (MESH:D002857), penicillin (MESH:D010406), EP-1215 (-), HE (MESH:D006371)
- **Species:** herpesvirus [taxon 39059], Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606], human gammaherpesvirus 4 (Epstein Barr virus, no rank) [taxon 10376]
- **Cell lines:** NP460 — Homo sapiens (Human), Telomerase immortalized cell line (CVCL_X205), T — Homo sapiens (Human), Esophageal squamous cell carcinoma, Cancer cell line (CVCL_3174), SH30027 — Homo sapiens (Human), Cardiomyopathy, Induced pluripotent stem cell (CVCL_AN34), EBNA1 B16 — Homo sapiens (Human), EBV-related Burkitt lymphoma, Cancer cell line (CVCL_2027), HONE1 — Homo sapiens (Human), Nasopharyngeal carcinoma, Cancer cell line (CVCL_8706), CT26 — Mus musculus (Mouse), Mouse colon adenocarcinoma, Cancer cell line (CVCL_7254), C666-1 — Homo sapiens (Human), Nasopharyngeal carcinoma, Cancer cell line (CVCL_7949), SUNE1 — Homo sapiens (Human), Hybrid cell line (CVCL_6946), B16 melanoma — Mus musculus (Mouse), Mouse melanoma, Cancer cell line (CVCL_F936), HEK293FT — Homo sapiens (Human), Transformed cell line (CVCL_6911), B16 — Mus musculus (Mouse), Hybridoma (CVCL_U043), C57BL/6 — Mus musculus (Mouse), Transformed cell line (CVCL_C0MU), MFC — Mus musculus (Mouse), Mouse gastric carcinoma, Cancer cell line (CVCL_5J48)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12913968/full.md

## References

2 references — full list in the complete paper: https://tomesphere.com/paper/PMC12913968/full.md

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Source: https://tomesphere.com/paper/PMC12913968