# Effects of different mulching practices on soil microbial community structure, function, and interaction networks in a chieh-qua cultivation

**Authors:** Yan-chun Qiao, Xiao-xin Jiang, Jian-po Zhan, Xiao-hui Cheng, Feng Liu, Wen-sheng Zhang, Guo-ping He, Jia-zhu Peng, Yu-jun Wu, Song-guang Yang

PMC · DOI: 10.3389/fmicb.2026.1691984 · Frontiers in Microbiology · 2026-02-04

## TL;DR

This study shows how different mulching methods affect soil microbes, impacting soil health and nitrogen levels in chieh-qua farming.

## Contribution

The study reveals how mulching affects microbial diversity, function, and interaction networks, offering guidance for sustainable soil management.

## Key findings

- Straw and biodegradable mulches increased microbial diversity compared to the control.
- Biodegradable mulch promoted complex microbial networks and denitrifying bacteria.
- Plastic mulches simplified microbial networks and reduced Thaumarchaeota abundance.

## Abstract

Mulching is a widely used agricultural management practice with profound effects on soil properties and crop productivity. However, its impact on soil microbial community structure and function remains insufficiently understood. This study aimed to investigate how different mulching treatments influence the composition, functional potential, and interaction networks of soil microbial communities in a chieh-qua–legume rotation system.

Metagenomic sequencing was employed to analyze soil samples subjected to four mulching treatments (biodegradable mulch, non-degradable silver mulch, non-degradable black mulch, and straw mulch) as well as a no-mulch control (CK).

Mulching treatments significantly altered soil microbial diversity and community structure, with straw and biodegradable mulches supporting higher diversity than the control. Biodegradable mulch was strongly correlated with changes in soil pH and enriched denitrifying bacteria such as Thauera and Comamonadaceae, while reducing the abundance of genes related to energy metabolism and carbon fixation. These findings suggest that organic carbon from mulch degradation may enhance denitrification, potentially leading to nitrogen loss. Co-occurrence network analysis revealed that biodegradable mulch promoted more complex and connected microbial networks, whereas plastic mulches resulted in simpler structures. Additionally, all mulching treatments significantly reduced the abundance of the autotrophic ammonia-oxidizing archaeon Thaumarchaeota, likely due to reduced soil oxygen under mulch.

This study provides new insights into how different mulching practices modulate soil microbial communities and their ecological functions. The results underscore the importance of tailoring mulching strategies to maintain soil health and fertility. Specifically, nitrogen supplementation is recommended when using biodegradable mulch in chieh-qua cultivation systems.

## Linked entities

- **Species:** Thauera (taxon 33057), Comamonadaceae (taxon 80864)

## Full-text entities

- **Diseases:** pests (MESH:D029021), soil-borne diseases (MESH:D005242)
- **Chemicals:** PCL (MESH:C016240), molybdenum blue (MESH:C017541), chlorophyll (MESH:D002734), Carbon (MESH:D002244), aminobenzoate (MESH:D062365), polymers (MESH:D011108), anon (MESH:C036468), Chromium (MESH:D002857), N2 (MESH:D009584), Hg (MESH:D008628), nitrate (MESH:D009566), Potassium (MESH:D011188), salt (MESH:D012492), oxoglutarate (MESH:D007656), phosphorus (MESH:D010758), oxygen (MESH:D010100), sulfides (MESH:D013440), ammonium fluoride (MESH:C024822), benzoate (MESH:D001565), Buchanan (-), heavy metals (MESH:D019216), argon (MESH:D001128), silver (MESH:D012834), Lead (MESH:D007854), Copper (MESH:D003300), Cadmium (MESH:D002104), sodium hexametaphosphate (MESH:C009285), Arsenic (MESH:D001151), hydrochloric acid (MESH:D006851), ammonium acetate (MESH:C018824), PLA (MESH:C033616), PBS (MESH:C089797), acetyl-CoA (MESH:D000105), agarose (MESH:D012685), polyhydroxyalkanoates (MESH:D054813), water (MESH:D014867), citrate (MESH:D019343), carbon dioxide (MESH:D002245)
- **Species:** Hydrogenophaga (genus) [taxon 47420], Enterobacter cloacae (species) [taxon 550], Rhizophagus (genus) [taxon 1129544], Funneliformis mosseae (species) [taxon 27381], Candidatus Saccharimonadota (candidate division TM7, phylum) [taxon 95818], Mycolicibacterium obuense (species) [taxon 1807], Thauera (genus) [taxon 33057], Helianthus (sunflowers, genus) [taxon 4231], Mucoromycota (phylum) [taxon 1913637], Benincasa hispida var. chieh-qua (varietas) [taxon 1208597], Reyranella (genus) [taxon 445219], Microbacterium sp. (species) [taxon 51671], Micromonospora chersina (species) [taxon 47854], Vigna unguiculata (cowpea, species) [taxon 3917], Paenibacillus massiliensis (species) [taxon 225917], Bacillus (genus) [taxon 55087], Streptomyces (genus) [taxon 1883], Alicycliphilus (genus) [taxon 201096], Allium sativum (garlic, species) [taxon 4682], Lysobacter (genus) [taxon 68], Lathyrus oleraceus (garden pea, species) [taxon 3888], Cupriavidus (genus) [taxon 106589], Benincasa hispida (ash gourd, species) [taxon 102211], Acidovorax (genus) [taxon 12916], Sphingomonas (genus) [taxon 13687], Pseudomonadota (proteobacteria, phylum) [taxon 1224], Pseudomonas (RNA similarity group I, genus) [taxon 286], Nitrososphaerota (phylum) [taxon 651137], Fusarium oxysporum (species) [taxon 5507], Citrus (genus) [taxon 2706], Bacillota (clostridial firmicutes, phylum) [taxon 1239]
- **Cell lines:** hC — Homo sapiens (Human), Adult hepatocellular carcinoma, Cancer cell line (CVCL_W518)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12913568/full.md

## References

68 references — full list in the complete paper: https://tomesphere.com/paper/PMC12913568/full.md

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Source: https://tomesphere.com/paper/PMC12913568