# Dynamic spatiotemporal graph attention networks for cross-regional multi-disease forecasting and intervention optimization

**Authors:** Siyan Liu, Lixing Cao

PMC · DOI: 10.3389/fpubh.2026.1720620 · Frontiers in Public Health · 2026-02-04

## TL;DR

This paper introduces a new AI framework for predicting disease spread and optimizing interventions by combining mobility data and machine learning.

## Contribution

A novel spatiotemporal graph attention network (ST-GAT) that integrates diverse data sources for multi-disease forecasting and intervention optimization.

## Key findings

- ST-GAT outperforms existing models like ARIMAX and LSTM in forecasting accuracy for diseases like ILI, HFMD, dengue, and RSV.
- The model identifies key transmission corridors and optimal intervention strategies that balance cost, fairness, and feasibility.
- A vaccine-first strategy is shown to be most cost-effective and stable for public health interventions.

## Abstract

Accurately predicting cross-regional spread of infectious diseases and designing cost-effective interventions is challenging due to population mobility, multi-pathogen circulation, and spatiotemporal heterogeneity. This study aims to build a unified framework that improves multi-disease forecasting, enhances interpretability of transmission pathways, and enables data-driven optimization of public-health interventions.

We develop a spatiotemporal graph attention network (ST-GAT) that integrates surveillance, meteorological, healthcare, and NPI data on a dynamic multi-relational graph combining geographic adjacency and origin-destination mobility. Spatial and temporal attention with a distribution-aware NB/ZINB decoder generates calibrated 1–4-week probabilistic forecasts, and the model is embedded in a multi-objective optimization engine to evaluate vaccine allocation and mobility restriction strategies under cost, fairness, and feasibility constraints.

Using ILI, HFMD, dengue, and RSV data, ST-GAT reduces MAE (34% vs ARIMAX, 27% vs Prophet, 15% vs LSTM/GRU) and improves WIS/CRPS across diseases. Spatial attention identifies high-weight transmission corridors, temporal attention highlights short lags of 1–4 weeks, and optimization shows a vaccine-first strategy achieves the best cost-effectiveness and stability.

The framework provides an integrated, interpretable, and generalizable solution for real-time epidemic prediction and equitable public-health decision-making.

## Linked entities

- **Diseases:** HFMD (MONDO:0005779), dengue (MONDO:0005502)

## Full-text entities

- **Genes:** GLYAT (glycine-N-acyltransferase) [NCBI Gene 10249] {aka ACGNAT, GAT}, SHROOM4 (shroom family member 4) [NCBI Gene 57477] {aka MRXSSDS, SHAP, shrm4}, PGR (progesterone receptor) [NCBI Gene 5241] {aka NR3C3, PR}, TTC41P (tetratricopeptide repeat domain 41, pseudogene) [NCBI Gene 253724] {aka GNN, GNNP}
- **Diseases:** infection (MESH:D007239), COVID-19 (MESH:D000086382), Malaria (MESH:D008288), mosquito-borne diseases (MESH:D000079426), intestinal diseases (MESH:D007410), Infectious Diseases (MESH:D003141), chronic diseases (MESH:D002908), PIT (MESH:C536528), WIS (MESH:C483997), RSV (MESH:D018357), Leave-One-Disease (MESH:D004194), pinball loss (MESH:D016388), respiratory diseases (MESH:D012140), ILI (MESH:D007251), HFMD (MESH:D006232), CRPS (MESH:D012019), DENGUE (MESH:D003715)
- **Chemicals:** OxCGRT (-)
- **Species:** Homo sapiens (human, species) [taxon 9606], Respiratory syncytial virus (no rank) [taxon 12814], Gammacoronavirus (genus) [taxon 694013]

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12913526/full.md

## Figures

14 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12913526/full.md

## References

50 references — full list in the complete paper: https://tomesphere.com/paper/PMC12913526/full.md

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Source: https://tomesphere.com/paper/PMC12913526