# From development to yield: genetic and molecular regulation of agronomic traits in maize seeds

**Authors:** Babatope Samuel Ajayo, Yubi Huang, Yufeng Hu

PMC · DOI: 10.3389/fpls.2026.1754331 · Frontiers in Plant Science · 2026-02-04

## TL;DR

This paper reviews how genes and molecules control maize seed traits like size, nutrition, and resilience, aiming to improve food security.

## Contribution

The paper synthesizes recent advances in understanding the genetic and molecular regulation of maize seed development and agronomic traits.

## Key findings

- Genetic and molecular mechanisms influence embryo, endosperm, and seed coat development in maize.
- Transcription factors and phytohormonal signals are key regulators of seed development traits.
- Multi-omics approaches reveal complex genetic networks affecting seed quality and yield.

## Abstract

Maize (Zea mays L.) plays a critical role in global food security. The challenge of climate pressures and rising population demands emphasizes the urgent need for high-yield, nutrient-rich and resilient cultivars. This review synthesizes the genetic and molecular mechanisms driving maize seed formation, highlighting the development of the embryo, endosperm, and seed coat that influence agronomic traits like kernel size, weight, vigor, and nutritional quality. We investigate how early events, from double fertilization through embryogenesis, endosperm development, and seed coat formation, set the stage for final seed traits. Recent studies, including genome-wide association studies, comparative genomics, candidate-gene analysis, and multi-omics approaches, have shed light on the complex genetic architecture underpinning these seed traits. These studies have identified key regulatory networks involving transcription factors and phytohormonal signals essential for seed development in maize. We also highlight the important molecular pathways that govern starch and protein biosynthesis, alongside nutrient transport processes that are crucial for seed filling. Despite significant advancements, challenges remain in functional validations and integrating multi-omics data across various contexts. Looking ahead, harnessing these insights can drive the breeding of maize cultivars that are resilient, nutrient-dense, and capable of meeting the challenges posed by climate change and rising food demand, ultimately supporting global food security.

## Linked entities

- **Species:** Zea mays (taxon 4577)

## Full-text entities

- **Genes:** lpa1 [NCBI Gene 542540], gamma-zein [NCBI Gene 541920], PRC2 [NCBI Gene 100282105], MTL [NCBI Gene 542432], HDA101 [NCBI Gene 541931], LOC100857066 (uncharacterized LOC100857066) [NCBI Gene 100857066] {aka GRMZM2G128228, GRMZM5G849788, Rgh3}, MAPK [NCBI Gene 100381337], LOC542375 (opaque endosperm 2) [NCBI Gene 542375] {aka GRMZM2G015534, Opaque-2, Opaque-e, o2}, SnRK1 [NCBI Gene 542687], PBF [NCBI Gene 542353], Zein [NCBI Gene 732802], ZmSSRP1 [NCBI Gene 542007], LOC542498 (leafy cotyledon) [NCBI Gene 542498] {aka CADR1, GRMZM2G011789, lec1}, sucrose synthase [NCBI Gene 542365], protein kinase [NCBI Gene 542271], VP1 [NCBI Gene 542523], histone deacetylase [NCBI Gene 541953], MYB118 [NCBI Gene 541731], LOC542143 (MAP kinase6) [NCBI Gene 542143] {aka GRMZM2G089484, ZmMPK6, mpk6}
- **Diseases:** embryo-defective (MESH:D020964), malnutrition (MESH:D044342)
- **Chemicals:** phytic acid (MESH:D010833), BETL (-), ABA (MESH:D000040), amylose (MESH:D000688), K (MESH:D011188), P (MESH:D010758), hexose (MESH:D006601), GA (MESH:C007842), sugar (MESH:D000073893), Zn (MESH:D015032), ethylene (MESH:C036216), N (MESH:D009584), Starch (MESH:D013213), carbohydrate (MESH:D002241), carbon (MESH:D002244), Cytokinins (MESH:D003583), lipid (MESH:D008055), Sucrose (MESH:D013395), Fe (MESH:D007501), T6P (MESH:C082722), Gibberellin (MESH:D005875), brassinosteroids (MESH:D060406), cadmium (MESH:D002104), copper (MESH:D003300), tryptophan (MESH:D014364), JA (MESH:C011006), Auxin (MESH:D007210)
- **Species:** Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Zea mays (maize, species) [taxon 4577], Homo sapiens (human, species) [taxon 9606], Bacillus sp. SA (species) [taxon 1168094], Oryza sativa (Asian cultivated rice, species) [taxon 4530]

## Full text

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## Figures

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## References

177 references — full list in the complete paper: https://tomesphere.com/paper/PMC12913495/full.md

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Source: https://tomesphere.com/paper/PMC12913495