# SIRT6 Regulates Protein Synthesis and Folding Through Nucleolar Remodeling

**Authors:** Daniel Stein, Christian Gallrein, Miguel Portillo, Shai Kaluski‐Kopach, Alfredo Garcia‐Venzor, Yuval Lachberg, Ekaterina Eremenko, Dmitrii Smirnov, Shiran Dror, Monica Einav, Ekaterina Khrameeva, Anat Ben‐Zvi, Björn Schumacher, Debra Toiber

PMC · DOI: 10.1111/acel.70384 · Aging Cell · 2026-02-17

## TL;DR

SIRT6 helps maintain protein balance in cells by regulating ribosome production and preventing protein misfolding, which is crucial for preventing aging and neurodegeneration.

## Contribution

This study reveals a novel role of SIRT6 in proteostasis through nucleolar remodeling and ribosome regulation.

## Key findings

- SIRT6 deletion increases protein translation but not chaperone levels, leading to misfolded proteins and aggregation.
- A C. elegans model shows SIRT6 deficiency causes reduced heat shock resistance and accelerated aging symptoms.
- Reducing protein translation pharmacologically rescues the negative effects of SIRT6 deficiency.

## Abstract

An important hallmark of aging—and particularly of neurodegeneration—is the loss of proteostasis, leading to cellular stress. However, the causal mechanisms driving this loss are unclear. We show that SIRT6 has a critical role in maintaining proteostasis. Mechanistically, SIRT6 negatively regulates global translation by controlling ribosomal genes, nucleolar function and TIP5 chromatin localization. SIRT6 deletion increases nucleolar size, rRNA production and protein translation. However, the expression of chaperones remains unchanged, failing to compensate for the excessive translation, leading to reduced folding capacity and production of aggregates. In vivo, we establish a 
C. elegans
 model (sir‐2.4 KO) that shows reduced heat shock resistance and an accelerated age‐dependent reduction in motility. Sir‐2.4 depletion crossed with a neuron‐specific polyQ strain led to premature motility loss and premature death. These results point to proteostasis‐stress intolerance in the absence of SIRT6, that can be rescued by pharmacologically reducing protein translation rates. Our data suggest that SIRT6 deficiency results in proteostasis loss through nucleolar dysfunction. These results highlight that deficient proteostasis begins with chromatin dysregulation resulting in neurodegeneration.

SIRT6 regulates proteostasis through nucleolar regulation. SIRT6 regulates (A) pre‐rRNA editing through nucleolar factors, as well as (B) rRNA transcription through TIP5 – and thus the NoRC – chromatin recruitment. (C) Once SIRT6 is depleted, the rRNA production and editing are increased, leading to a dramatic elevation in translation rates. However, chaperone levels remain unchanged, leading to the accumulation of misfolded proteins and aggregation upon SIRT6 deletion. (D) In a 
C. elegans
‐based model, deleting the SIRT6 ortholog (sir‐2.4) leads to impaired heat shock resistance, as well as reduced motility upon overexpression of a neuronal aggregation‐prone protein (PolyQ40neuro
). (E) However, attenuating translation using 4PBA leads to the rescue of the sir‐2.

4KO;PolyQ40neuro
 strain.

## Linked entities

- **Genes:** SIRT6 (sirtuin 6) [NCBI Gene 51548], BAZ2A (bromodomain adjacent to zinc finger domain 2A) [NCBI Gene 11176], sir-2.4 (NAD-dependent protein deacetylase sir-2.4) [NCBI Gene 182284]
- **Proteins:** SIRT6 (sirtuin 6), BAZ2A (bromodomain adjacent to zinc finger domain 2A), norC (nitric oxide reductase subunit C)
- **Chemicals:** 4PBA (PubChem CID 5258)

## Full-text entities

- **Genes:** EIF2A (eukaryotic translation initiation factor 2A) [NCBI Gene 83939] {aka CDA02, EIF-2A, MST089, MSTP004, MSTP089}, fib-1 (rRNA 2'-O-methyltransferase fibrillarin) [NCBI Gene 179999], PRL (prolactin) [NCBI Gene 5617] {aka GHA1, pPRL}, Nucleolin (nucleolin multifunctional protein) [NCBI Gene 17975] {aka B530004O11Rik, C23, D0Nds28, D1Nds28, Ncl, Nucl}, Rbfox3 (RNA binding protein, fox-1 homolog (C. elegans) 3) [NCBI Gene 52897] {aka Fox-3, Hrnbp3, NeuN, Neuna60}, Sirt6 (sirtuin 6) [NCBI Gene 50721] {aka 2810449N18Rik, Sir2l6, mSIRT6}, POLI (DNA polymerase iota) [NCBI Gene 11201] {aka RAD30B, RAD3OB, eta2}, RBFOX3 (RNA binding fox-1 homolog 3) [NCBI Gene 146713] {aka FOX-3, FOX3, HRNBP3, NEUN}, HTT (huntingtin) [NCBI Gene 3064] {aka HD, IT15, LOMARS}, sir-2.4 (NAD-dependent protein deacetylase sir-2.4) [NCBI Gene 182284], SOD1 (superoxide dismutase 1) [NCBI Gene 6647] {aka ALS, ALS1, HEL-S-44, IPOA, SOD, STAHP}, SIRT6 (sirtuin 6) [NCBI Gene 51548] {aka SIR2L6, hSIRT6}, FBL (fibrillarin rRNA 2'-O-methyltransferase) [NCBI Gene 2091] {aka FIB, FLRN, Nop1, RNU3IP1}, SNCA (synuclein alpha) [NCBI Gene 6622] {aka NACP, PARK1, PARK4, PD1}, BAZ2A (bromodomain adjacent to zinc finger domain 2A) [NCBI Gene 11176] {aka TIP5, WALp3}, NUCLEOLIN (nucleolin multifunctional protein) [NCBI Gene 4691] {aka C23, NCL, Nsr1}, MAPT (microtubule associated protein tau) [NCBI Gene 4137] {aka DDPAC, FTD1, FTDP-17, MAPTL, MSTD, MTBT1}, EIF4EBP1 (eukaryotic translation initiation factor 4E binding protein 1) [NCBI Gene 1978] {aka 4E-BP1, 4EBP1, BP-1, PHAS-I}, SMARCA5 (SNF2 related chromatin remodeling ATPase 5) [NCBI Gene 8467] {aka ISWI, SNF2H, WCRF135, hISWI, hSNF2H}, PRKN (parkin RBR E3 ubiquitin protein ligase) [NCBI Gene 5071] {aka AR-JP, LPRS2, PARK2, PDJ}, APP (amyloid beta precursor protein) [NCBI Gene 351] {aka AAA, ABETA, ABPP, AD1, APPI, CTFgamma}, daf-16 (Forkhead box protein O) [NCBI Gene 172981]
- **Diseases:** progerias (MESH:D011371), memory loss (MESH:D008569), motility impairment (MESH:D015835), nucleolar abnormalities (MESH:D000014), amyotrophic lateral sclerosis (MESH:D000690), developmental retardation (MESH:C567856), SIRT6 deficiency (MESH:D007153), premature death (MESH:D003643), age-related neurodegeneration (MESH:D010024), learning impairments (MESH:D007859), Paralysis (MESH:D010243), Nematode (MESH:D009349), Neurodegeneration (MESH:D019636), mitochondrial dysfunction (MESH:D028361), PD (MESH:D010300), behavioral defects (MESH:D001523), progeroid syndromes (MESH:C536423), decline of neuronal function (MESH:D060825), Alzheimer's (MESH:D000544), HD (MESH:D006816)
- **Chemicals:** polyQ (MESH:C097188), L-glutamine (MESH:D005973), CO2 (MESH:D002245), sucrose (MESH:D013395), PFA (MESH:C003043), agarose (MESH:D012685), 4-PBA (MESH:C121358), PBS (MESH:D007854), KCl (MESH:D011189), CHX (MESH:D003513), ice (MESH:D007053), Hoechst (-), FC (MESH:C095424), Aminoacyl-tRNA (MESH:D012346), HEPES (MESH:D006531), Penicillin (MESH:D010406), Puromycin (MESH:D011691), glycerol (MESH:D005990), 5-Fluorouridine (MESH:C001943), amino acid (MESH:D000596), 4-phenylbutyric acid (MESH:C075773), NaN3 (MESH:D019810), trichostatin A. (MESH:C012589), Laemmli buffer (MESH:C088816), HCl (MESH:D006851), SDS (MESH:D012967), magnesium acetate (MESH:C000656591), cholesterol (MESH:D002784), platinum (MESH:D010984), potassium acetate (MESH:D019347), NaCl (MESH:D012965), CX-5461 (MESH:C557717), NP-40 (MESH:C010615), EDTA (MESH:D004492), Triton X-100 (MESH:D017830), Streptomycin (MESH:D013307)
- **Species:** Nematoda (nematode, phylum) [taxon 6231], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Homo sapiens (human, species) [taxon 9606], Melanogaster (genus) [taxon 80614], C. elegans [taxon 328850], Caenorhabditis elegans (species) [taxon 6239], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** SH-SY5Y — Homo sapiens (Human), Neuroblastoma, Cancer cell line (CVCL_0019), COP262 — Homo sapiens (Human), Transformed cell line (CVCL_E533), HeLa — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_0030), C57BL/6 — Mus musculus (Mouse), Transformed cell line (CVCL_C0MU), Q74 — Canis lupus familiaris (Dog), Canine mammary carcinoma, Cancer cell line (CVCL_C1II), OP50-1 — Homo sapiens (Human), q11.2) BCR-ABL1, Cancer cell line (CVCL_DG77), S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), HEK293T — Homo sapiens (Human), Transformed cell line (CVCL_0063)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12913217/full.md

## References

67 references — full list in the complete paper: https://tomesphere.com/paper/PMC12913217/full.md

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Source: https://tomesphere.com/paper/PMC12913217