# SEMA3B is associated with disease activity and infliximab response in IBD patients but does not contribute to the development of intestinal inflammation in vivo

**Authors:** Laura Arosa, Beatriz Malvar-Fernández, José Antúnez-López, Samuel García, Javier Conde-Aranda

PMC · DOI: 10.3389/fimmu.2026.1677130 · Frontiers in Immunology · 2026-02-04

## TL;DR

SEMA3B is linked to IBD disease activity and response to treatment, but it doesn't cause intestinal inflammation in mice.

## Contribution

The study identifies SEMA3B as a potential biomarker for IBD and evaluates its role in intestinal inflammation for the first time.

## Key findings

- SEMA3B expression is reduced in IBD patients compared to healthy controls.
- Low SEMA3B levels correlate with poor response to infliximab in UC patients.
- Administering Sema3B to mice did not affect the progression of DSS-induced colitis.

## Abstract

Inflammatory bowel disease (IBD) is a chronic inflammatory disorder with increasing worldwide incidence and prevalence. While current treatment options alleviate part of the socioeconomic burden of this disease, new biomarkers and safer therapeutic approaches are needed to combat intestinal inflammation. Class-3 semaphorins (sema3A-3G) have emerged as important regulators of some biological functions underlying inflammation. For instance, SEMA3B protects against tissue damage in arthritis. However, the association of this protein with UC and its involvement in the onset of intestinal inflammation remains elusive.

To close that knowledge gap, we performed a comprehensive transcriptomic analysis of different patient cohorts. Moreover, we investigated the therapeutic efficacy of Sema3B in vivo.

Our findings revealed that the expression of SEMA3B was downregulated in IBD patients compared with healthy controls. Similarly, non-responder UC patients to infliximab showed reduced transcript levels of that class-3 semaphorin before receiving the treatment. Unfortunately, the administration of recombinant Sema3B to mice subjected to DSS-acute colitis did not modify the course of the disease.

Therefore, SEMA3B appears to be an interesting biomarker in the context of intestinal inflammation, which deserves further validation in larger cohorts. Nonetheless, based on our in vivo results, the implication of this factor in the development of colitis seems to be minimal.

## Linked entities

- **Genes:** SEMA3B (semaphorin 3B) [NCBI Gene 7869]
- **Proteins:** SEMA3B (semaphorin 3B), SEMA3B (semaphorin 3B)
- **Diseases:** Inflammatory bowel disease (MONDO:0005265), IBD (MONDO:0005265), colitis (MONDO:0005292)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** NRP2 (neuropilin 2) [NCBI Gene 8828] {aka NP2, NPN2, PRO2714, VEGF165R2}, Il6 (interleukin 6) [NCBI Gene 16193] {aka Il-6}, Cxcr1 (C-X-C motif chemokine receptor 1) [NCBI Gene 227288] {aka Il8ra}, Plxna2 (plexin A2) [NCBI Gene 18845] {aka 2810428A13Rik, OCT, PlexA2, Plxn2, mKIAA0463}, Ighv1-9 (immunoglobulin heavy variable 1-9) [NCBI Gene 668478] {aka Gm16697, Igg2a}, TREM1 (triggering receptor expressed on myeloid cells 1) [NCBI Gene 54210] {aka CD354, TREM-1}, PLXNA2 (plexin A2) [NCBI Gene 5362] {aka OCT, PLXN2}, POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, ANXA5 (annexin A5) [NCBI Gene 308] {aka ANX5, CPB-I, ENX2, HEL-S-7, PP4, RPRGL3}, NRP1 (neuropilin 1) [NCBI Gene 8829] {aka BDCA4, CD304, NP1, NRP, VEGF165R}, Sema3e (sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E) [NCBI Gene 20349] {aka 6430702L12, Semah, mKIAA0331}, Sema3f (sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F) [NCBI Gene 20350] {aka Sema4, Semak}, PLXNA4 (plexin A4) [NCBI Gene 91584] {aka FAYV2820, PLEXA4, PLXNA4A, PLXNA4B, PRO34003}, Il1b (interleukin 1 beta) [NCBI Gene 16176] {aka IL-1beta, Il-1b}, PTPRC (protein tyrosine phosphatase receptor type C) [NCBI Gene 5788] {aka B220, CD45, CD45R, GP180, IMD105, L-CA}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, CLDN4 (claudin 4) [NCBI Gene 1364] {aka CPE-R, CPER, CPETR, CPETR1, WBSCR8, hCPE-R}, Nrp (neural regeneration protein) [NCBI Gene 654309], Cxcl5 (C-X-C motif chemokine ligand 5) [NCBI Gene 20311] {aka AMCF-II, Cxcl6, ENA-78, GCP-2, LIX, Scyb5}, Nrp1 (neuropilin 1) [NCBI Gene 18186] {aka C530029I03, NP-1, NPN-1, Npn1, Nrp}, TNFRSF1A (TNF receptor superfamily member 1A) [NCBI Gene 7132] {aka CD120a, FPF, TBP1, TNF-R, TNF-R-I, TNF-R55}, Cldn4 (claudin 4) [NCBI Gene 12740] {aka Cep-r, Cpetr, Cpetr1}, Sema3g (sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G) [NCBI Gene 218877], Sema3c (sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C) [NCBI Gene 20348] {aka 1110036B02Rik, SemE, Semae}, ITGAX (integrin subunit alpha X) [NCBI Gene 3687] {aka CD11C, SLEB6}, HOXA5 (homeobox A5) [NCBI Gene 3202] {aka HOX1, HOX1.3, HOX1C}, PLXNA3 (plexin A3) [NCBI Gene 55558] {aka 6.3, HSSEXGENE, PLXN3, PLXN4, XAP-6}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, PLXNA1 (plexin A1) [NCBI Gene 5361] {aka DWOPNED, NOV, NOVP, PLEXIN-A1, PLXN1}, Sema3b (sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B) [NCBI Gene 20347] {aka SemA, Semaa, sema5, semaV}, CAT (catalase) [NCBI Gene 847], Cxcl2 (C-X-C motif chemokine ligand 2) [NCBI Gene 20310] {aka CINC-2a, GROb, Gro2, MIP-2, MIP-2a, Mgsa-b}, MPO (myeloperoxidase) [NCBI Gene 4353], Cxcl1 (C-X-C motif chemokine ligand 1) [NCBI Gene 14825] {aka Fsp, Gro1, KC, Mgsa, N51, Scyb1}, Plxna1 (plexin A1) [NCBI Gene 18844] {aka 2600013D04Rik, NOV, PlexA1, Plxn1, mKIAA4053}, SEMA3B (semaphorin 3B) [NCBI Gene 7869] {aka LUCA-1, SEMA5, SEMAA, SemA, semaV}, Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, Mpo (myeloperoxidase) [NCBI Gene 17523] {aka mKIAA4033}
- **Diseases:** systemic lupus erythematosus (MESH:D008180), IMID (MESH:C567355), lung injury (MESH:D055370), neuroinflammation (MESH:D000090862), liver fibrosis (MESH:D008103), cancer (MESH:D009369), asthmatic (MESH:D013224), pain (MESH:D010146), airway inflammation (MESH:D007249), UC (MESH:D003093), necrotic (MESH:D009336), pulmonary fibrosis (MESH:D011658), renal damage (MESH:D007674), IBD (MESH:D015212), epithelial hyperplasia (MESH:D017573), weight loss (MESH:D015431), arthralgia (MESH:D018771), colitis (MESH:D003092), idiopathic lung fibrosis (MESH:D054990), CD (MESH:D003424), RA (MESH:D001172), arthritis (MESH:D001168)
- **Chemicals:** infliximab (MESH:D000069285), ethanol (MESH:D000431), HCL (MESH:D006851), SDS (MESH:D012967), sodium fluoride (MESH:D012969), H2O (MESH:D014867), Triton X-100 (MESH:D017830), EDTA (MESH:D004492), Cy5.5 (MESH:C098793), phosphate (MESH:D010710), NaCl (MESH:D012965), paraffin (MESH:D010232), formalin (MESH:D005557), eosin (MESH:D004801), sodium pyrophosphate (MESH:C003319), carbon dioxide (MESH:D002245), IFX (MESH:D007069), DNBS (MESH:C007488), golimumab (MESH:C529000), vedolizumab (MESH:C543529), hexadecyltrimethylammonium bromide (MESH:D000077286), hematoxylin (MESH:D006416), dianisidine (MESH:D003962), K (MESH:D011188), H&amp;E (MESH:D006371), H2O2 (MESH:D006861), HS-200 (-)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606], Rattus norvegicus (brown rat, species) [taxon 10116]
- **Cell lines:** /6 — Homo sapiens (Human), Tongue squamous cell carcinoma, Cancer cell line (CVCL_5985)

## Full text

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## Figures

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## References

36 references — full list in the complete paper: https://tomesphere.com/paper/PMC12913132/full.md

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Source: https://tomesphere.com/paper/PMC12913132