# T cell and monocyte activation in concert with hematopoietic stem cell interactions shapes the post-allogeneic transplant immune landscape in poor graft function

**Authors:** Ashvind Prabahran, Zhijie Wu, Shouguo Gao, Huw Morgan, Nicholas Holzwart, Mandy Ludford-Menting, Mayani Rawicki, Jessica Klass, Ray-Mun Koo, Clarissa Wilson, Piers Blombery, Chin Wee Tan, Saanvi Indukuri, Lynette Chee, David Ritchie, Neal S. Young, Xingmin Feng, Rachel Koldej

PMC · DOI: 10.3389/fimmu.2026.1750093 · Frontiers in Immunology · 2026-02-04

## TL;DR

This study explores how immune system changes after stem cell transplants, especially in patients with poor graft function, and suggests immune modulation could help.

## Contribution

The study reveals hyper-inflammation in post-transplant immune landscapes, particularly in poor graft function, through detailed immune and hematopoietic analysis.

## Key findings

- T cell oligoclonality, activation, and exhaustion are observed in post-alloSCT patients compared to healthy donors.
- BM nucleated cells, especially monocytes, show increased activation and IFN-g response post-transplant.
- Enhanced cell-cell interactions between immune cells and hematopoietic stem cells are noted post-alloSCT.

## Abstract

Post-allogeneic stem cell transplantation (alloSCT) can be complicated by poor graft function (PGF), a life-threatening condition characterized by complete donor chimerism alongside persistent multilineage cytopenias. PGF significantly increases the risk of bleeding, infection, and transfusion dependence. The cellular changes during hematopoiesis post-alloSCT, particularly in PGF, remain poorly defined.

To evaluate the immune and hematopoietic reconstitution and dysfunction post-alloSCT, with a focus on PGF, we applied a comprehensive suite of histological, immunological, and molecular biological techniques to bone marrow (BM) and peripheral blood samples from patients with PGF, good graft function (GGF), and healthy donors (HDs).

By approximately 100 days post-alloSCT, patients demonstrated T cell oligoclonality, activation, and exhaustion compared to HDs. BM nucleated cells, particularly monocytes, exhibited increased activation and IFN-g response post-alloSCT compared to those of HDs. Moreover, cell-cell interactions between immune cells and hematopoietic stem and progenitor cells were notably enhanced post-alloSCT. While most inflammatory changes were present in both PGF and GGF, they were more pronounced in PGF.

Our results demonstrate a hyper-inflamed post-alloSCT environment involving both innate (monocytes) and adaptive (T cells) immune responses and their active interactions, more in PGF, highlighting that immune modulation may serve as an alternative or adjunctive therapeutic approach for PGF.

## Linked entities

- **Proteins:** IFNG (interferon gamma)

## Full-text entities

- **Genes:** IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, MPO (myeloperoxidase) [NCBI Gene 4353], CD14 (CD14 molecule) [NCBI Gene 929], FGF2 (fibroblast growth factor 2) [NCBI Gene 2247] {aka BFGF, FGF-2, FGFB, HBGF-2}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, FAS (Fas cell surface death receptor) [NCBI Gene 355] {aka ALPS1A, APO-1, APT1, CD95, FAS1, FASTM}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, FLT3LG (fms related receptor tyrosine kinase 3 ligand) [NCBI Gene 2323] {aka FL, FLG3L, FLT3L, IMD125}, TGFBR1 (transforming growth factor beta receptor 1) [NCBI Gene 7046] {aka AAT5, ACVRLK4, ALK-5, ALK5, ESS1, LDS1}, IFNA1 (interferon alpha 1) [NCBI Gene 3439] {aka IFL, IFN, IFN-ALPHA, IFN-alphaD, IFNA13, IFNA@}, TNFSF9 (TNF superfamily member 9) [NCBI Gene 8744] {aka 4-1BB-L, CD137L, TNLG5A}, CXCL12 (C-X-C motif chemokine ligand 12) [NCBI Gene 6387] {aka IRH, PBSF, SCYB12, SDF1, TLSF, TPAR1}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, PTPRC (protein tyrosine phosphatase receptor type C) [NCBI Gene 5788] {aka B220, CD45, CD45R, GP180, IMD105, L-CA}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, PGF (placental growth factor) [NCBI Gene 5228] {aka D12S1900, PGFL, PIGF, PLGF, PlGF-2, SHGC-10760}, IL22 (interleukin 22) [NCBI Gene 50616] {aka IL-21, IL-22, IL-D110, IL-TIF, ILTIF, TIFIL-23}, B3GAT1 (beta-1,3-glucuronyltransferase 1) [NCBI Gene 27087] {aka CD57, GLCATP, GLCUATP, HNK1, LEU7, NK-1}, CD44 (CD44 molecule (IN blood group)) [NCBI Gene 960] {aka CDW44, CSPG8, ECM-III, ECMR-III, H-CAM, HCELL}, STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774] {aka ADMIO, ADMIO1, APRF, HIES}, CD163 (CD163 molecule) [NCBI Gene 9332] {aka M130, MM130, SCARI1}, IL15 (interleukin 15) [NCBI Gene 3600] {aka IL-15}, TNFSF4 (TNF superfamily member 4) [NCBI Gene 7292] {aka CD134L, CD252, GP34, OX-40L, OX4OL, TNLG2B}, TNFSF13 (TNF superfamily member 13) [NCBI Gene 8741] {aka APRIL, CD256, TALL-2, TALL2, TNLG7B, TRDL-1}, BCR (BCR activator of RhoGEF and GTPase) [NCBI Gene 613] {aka ALL, BCR1, CML, D22S11, D22S662, PHL}, IL27 (interleukin 27) [NCBI Gene 246778] {aka IL-27, IL-27A, IL27A, IL27p28, IL30, p28}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, CD34 (CD34 molecule) [NCBI Gene 947], EGF (epidermal growth factor) [NCBI Gene 1950] {aka HOMG4, URG}, TRBV20OR9-2 (T cell receptor beta variable 20/OR9-2 (non-functional)) [NCBI Gene 6962] {aka CDR3, TCRBV20S2, TCRBV2O, TCRBV2S2O}, IL33 (interleukin 33) [NCBI Gene 90865] {aka C9orf26, DVS27, IL1F11, NF-HEV, NFEHEV}, TNFRSF14 (TNF receptor superfamily member 14) [NCBI Gene 8764] {aka ATAR, CD270, HVEA, HVEM, LIGHTR, TR2}, HGF (hepatocyte growth factor) [NCBI Gene 3082] {aka DFNB39, F-TCF, HGFB, HPTA, SF}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, FLT3 (fms related receptor tyrosine kinase 3) [NCBI Gene 2322] {aka CD135, FLK-2, FLK2, STK1}
- **Diseases:** viral infections (MESH:D014777), cytopenias (MESH:D006402), GGF (MESH:D051799), BM (MESH:D001855), infection (MESH:D007239), NHL (MESH:D008228), HSC dysfunction (MESH:D006331), AA (MESH:D000741), alloSCT (MESH:D020203), MSD (MESH:D052517), HDs (MESH:D000067329), inflammatory (MESH:D007249), GVHD (MESH:D006086), mud disease (MESH:D007922), T-cell large granular lymphocytic leukemia (MESH:D054066), HD (MESH:D006816), malignancy (MESH:D009369), bleeding (MESH:D006470), CMV (MESH:D003586), hypoxia (MESH:D000860), BM failure (MESH:D000080983), MDS (MESH:D009190), AML (MESH:D015470)
- **Chemicals:** hematoxylin (MESH:D006416), DSP (-), reactive oxygen species (MESH:D017382), eosin (MESH:D004801), eltrombopag (MESH:C520809)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12913120/full.md

## References

35 references — full list in the complete paper: https://tomesphere.com/paper/PMC12913120/full.md

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Source: https://tomesphere.com/paper/PMC12913120