# Distinct endothelial cells in chronic thromboembolic pulmonary hypertension

**Authors:** Hon-Sum Jeffrey Man, Yidan D. Zhao, Usman Asghar, Licun Wu, Jonathan C. Yeung, John Thomas Granton, Marc de Perrot

PMC · DOI: 10.1038/s44325-025-00072-8 · npj Cardiovascular Health · 2025-07-02

## TL;DR

This study identifies unique endothelial cell subtypes in chronic thromboembolic pulmonary hypertension, revealing how they contribute to unresolved blood clots in lung arteries.

## Contribution

The discovery of a novel endothelial cell subset co-expressing pulmonary and bronchial markers in CTEPH provides new insights into disease mechanisms.

## Key findings

- CTEPH endothelial cells show significant heterogeneity and phenotypic shifts compared to controls.
- A unique EC subset co-expressing pulmonary and bronchial markers is identified in CTEPH.
- Perturbations in coagulation, fibrinolysis, and TGF-β signaling are observed in CTEPH endothelial cells.

## Abstract

Chronic thromboembolic pulmonary hypertension (CTEPH) is a life-threatening condition characterized by unresolved thrombi obstructing the pulmonary arteries. Endothelial cells (ECs) are essential regulators of thrombosis and thrombus resolution, yet their molecular phenotypes in CTEPH are incompletely understood. Using single-cell RNA sequencing of CTEPH surgical specimens and control ECs from the Human Lung Cell Atlas, we uncover marked EC heterogeneity in CTEPH. Compared to controls, CTEPH ECs display marked phenotypic shifts, with the loss and emergence of distinct EC subpopulations, including a unique subset co-expressing pulmonary and bronchial EC markers. Our analysis reveals perturbed endothelial thrombosis regulation, encompassing coagulation, fibrinolysis, inflammation, TGF-β signaling, and angiogenesis, while identifying novel target genes. These findings provide a comprehensive view of endothelial contributions to delayed thrombus resolution, offering new insights into the pathophysiology of CTEPH and potential therapeutic targets.

## Linked entities

- **Genes:** TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040]
- **Diseases:** chronic thromboembolic pulmonary hypertension (MONDO:0013024), CTEPH (MONDO:0013024)

## Full-text entities

- **Genes:** CD200 (CD200 molecule) [NCBI Gene 4345] {aka MOX1, MOX2, MRC, OX-2}, MEF2C (myocyte enhancer factor 2C) [NCBI Gene 4208] {aka C5DELq14.3, DEL5q14.3, NEDHSIL}, ZEB1 (zinc finger E-box binding homeobox 1) [NCBI Gene 6935] {aka AREB6, BZP, DELTAEF1, FECD6, NIL2A, PPCD3}, PROCR (protein C receptor) [NCBI Gene 10544] {aka CCCA, CCD41, EPCR}, Selp (selectin P) [NCBI Gene 25651] {aka PSELECT}, F3 (coagulation factor III, tissue factor) [NCBI Gene 2152] {aka CD142, TF, TFA}, PLAU (plasminogen activator, urokinase) [NCBI Gene 5328] {aka ATF, BDPLT5, QPD, UPA, URK, u-PA}, NKS1 (natural killer cell susceptibility 1) [NCBI Gene 4819] {aka EC-1, EC1}, Klf2 (KLF transcription factor 2) [NCBI Gene 306330] {aka Lklf}, EDN1 (endothelin 1) [NCBI Gene 1906] {aka ARCND3, ET1, HDLCQ7, PPET1, QME}, DKK2 (dickkopf Wnt signaling pathway inhibitor 2) [NCBI Gene 27123] {aka DKK-2}, ZEB2 (zinc finger E-box binding homeobox 2) [NCBI Gene 9839] {aka HSPC082, SIP-1, SIP1, SMADIP1, ZFHX1B}, PTGIS (prostaglandin I2 synthase) [NCBI Gene 5740] {aka CYP8, CYP8A1, PGIS, PTGI}, dpp (decapentaplegic) [NCBI Gene 33432] {aka BMP, Bmp, CG9885, DPP-C, Dm-DPP, DmDPP}, Xist (X inactive specific transcript) [NCBI Gene 100911498], VWF (von Willebrand factor) [NCBI Gene 7450] {aka F8VWF, VWD}, GATA6 (GATA binding protein 6) [NCBI Gene 2627], TFPI (tissue factor pathway inhibitor) [NCBI Gene 7035] {aka EPI, LACI, TFI, TFPI1}, EDNRB (endothelin receptor type B) [NCBI Gene 1910] {aka ABCDS, ET-B, ET-BR, ETB, ETB1, ETBR}, SPRY1 (sprouty RTK signaling antagonist 1) [NCBI Gene 10252] {aka hSPRY1}, CXCL8 (C-X-C motif chemokine ligand 8) [NCBI Gene 3576] {aka GCP-1, GCP1, IL8, LECT, LUCT, LYNAP}, BMP6 (bone morphogenetic protein 6) [NCBI Gene 654] {aka IO, VGR, VGR1}, ACVRL1 (activin A receptor like type 1) [NCBI Gene 94] {aka ACVRLK1, ALK-1, ALK1, HHT, HHT2, ORW2}, BMPR2 (bone morphogenetic protein receptor type 2) [NCBI Gene 659] {aka BMPR-II, BMPR3, BMR2, BRK-3, POVD1, PPH1}, Tgfb1 (transforming growth factor, beta 1) [NCBI Gene 59086] {aka Tgfb}, RELA (RELA proto-oncogene, NF-kB subunit) [NCBI Gene 5970] {aka AIF3BL3, CMCU, NFKB3, p65}, PIEZO1 (piezo type mechanosensitive ion channel component 1 (Er blood group)) [NCBI Gene 9780] {aka DHS, ER, FAM38A, LMPH3, LMPHM6, Mib}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, CD34 (CD34 molecule) [NCBI Gene 947], TGFBR1 (transforming growth factor beta receptor 1) [NCBI Gene 7046] {aka AAT5, ACVRLK4, ALK-5, ALK5, ESS1, LDS1}, Pagr1 (Paxip1-associated glutamate-rich protein 1) [NCBI Gene 293500] {aka Pa1, RGD1305592}, SPARC (secreted protein acidic and cysteine rich) [NCBI Gene 6678] {aka BM-40, OI17, ON, ONT}, MEG8 (maternally expressed 8, small nucleolar RNA host gene) [NCBI Gene 79104] {aka Bsr, Irm, LINC00024, NCRNA00024, Rian, SNHG23}, STC2 (stanniocalcin 2) [NCBI Gene 8614] {aka STC-2, STCRP}, PECAM1 (platelet and endothelial cell adhesion molecule 1) [NCBI Gene 5175] {aka CD31, CD31/EndoCAM, GPIIA', PECA1, PECAM-1, endoCAM}, NOS3 (nitric oxide synthase 3) [NCBI Gene 4846] {aka EC-NOS, ECNOS, MYMY8, NOSIII, cNOS, eNOS}, SOX17 (SRY-box transcription factor 17) [NCBI Gene 64321] {aka PPH7, VUR3}, ARTN (artemin) [NCBI Gene 9048] {aka ART, ENOVIN, EVN, NBN}, SPRY1 (sprouty RTK signaling antagonist 1) [NCBI Gene 507095], SERPINE1 (serpin family E member 1) [NCBI Gene 5054] {aka PAI, PAI-1, PAI1, PLANH1}, VEGFA (vascular endothelial growth factor A) [NCBI Gene 7422] {aka L-VEGF, MVCD1, VEGF, VPF}, CXCL12 (C-X-C motif chemokine ligand 12) [NCBI Gene 6387] {aka IRH, PBSF, SCYB12, SDF1, TLSF, TPAR1}, ENG (endoglin) [NCBI Gene 2022] {aka END, HHT1, ORW1}, HIF1A (hypoxia inducible factor 1 subunit alpha) [NCBI Gene 3091] {aka HIF-1-alpha, HIF-1A, HIF-1alpha, HIF1, HIF1-ALPHA, MOP1}, GJA5 (gap junction protein alpha 5) [NCBI Gene 539491] {aka CXNI}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, Vwf (von Willebrand factor) [NCBI Gene 116669], Ccl2 (C-C motif chemokine ligand 2) [NCBI Gene 24770] {aka MCP-1, MCP1, Scya2, Sigje}, Il6 (interleukin 6) [NCBI Gene 24498] {aka ILg6, Ifnb2}, BST1 (bone marrow stromal cell antigen 1) [NCBI Gene 683] {aka CD157, cADPR2}, ATF3 (activating transcription factor 3) [NCBI Gene 467]
- **Diseases:** sickle cell disease (MESH:D000755), EC (MESH:D005955), PAH (MESH:D000081029), EC dysfunction (MESH:D006331), Atherosclerosis (MESH:D050197), death (MESH:D003643), vaso-occlusive crises (MESH:D013224), right heart failure (MESH:D006333), fibrosis (MESH:D005355), Thrombus (MESH:D013927), Inflammatory (MESH:D007249), PH (MESH:D006976), hypoxia (MESH:D000860), fibro (MESH:D009810), PA (MESH:D000071079), right atrial mass (MESH:C536030), endothelial dysfunction (MESH:D014652), PEA (MESH:D008171), CTEPH (MESH:D011655), Protein alias (MESH:D011488), coagulation (MESH:D001778)
- **Chemicals:** oxygen (MESH:D010100), Trypan Blue (MESH:D014343), HBSS (-), nitric oxide (MESH:D009569), copper (MESH:D003300), prostacyclin (MESH:D011464), PBS (MESH:D007854), crizanlizumab (MESH:C000614139)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** EC.5 — Oncorhynchus tshawytscha (Chinook salmon), Spontaneously immortalized cell line (CVCL_DG46), PAECs — Bos taurus (Bovine), Spontaneously immortalized cell line (CVCL_4130), E.8 — Mus musculus (Mouse), Transformed cell line (CVCL_C4KE), PA — Homo sapiens (Human), Finite cell line (CVCL_3716), EC.2 — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_5V06), CTEPH — Homo sapiens (Human), Finite cell line (CVCL_3718), EC.3 — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_5V07), E.2 — Mus musculus (Mouse), Carcinoma of the mouse prostate gland, Cancer cell line (CVCL_S003)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12912402/full.md

## References

4 references — full list in the complete paper: https://tomesphere.com/paper/PMC12912402/full.md

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Source: https://tomesphere.com/paper/PMC12912402