# Palladium-catalysed synthesis of small-molecule epigenetic inhibitors as anticancer therapeutics

**Authors:** Ram Sharma, Mandeep Rana, Amandeep Thakur, Ritu Ojha, Seyyed Mojtaba Mousavi, Ashwani Dhingra, Kunal Nepali

PMC · DOI: 10.1080/14756366.2026.2621477 · Journal of Enzyme Inhibition and Medicinal Chemistry · 2026-02-16

## TL;DR

This paper reviews recent advances in using palladium-catalyzed reactions to design and synthesize small-molecule drugs targeting epigenetic processes for cancer treatment.

## Contribution

The paper provides a comprehensive overview of palladium-catalyzed methods for creating epigenetic inhibitors, emphasizing practical strategies for drug design.

## Key findings

- Palladium-catalyzed reactions are versatile for constructing drug-like molecules targeting epigenetic pathways.
- Optimization of ligand structure, base, and solvent significantly impacts the efficiency of these reactions.
- The review highlights strategies for developing selective and hybrid epigenetic inhibitors and degraders.

## Abstract

Palladium-catalysed reactions have emerged as indispensable tools in medicinal chemistry, enabling the precise construction of C-C and C-N bonds across a wide spectrum of drug-like molecular frameworks. This manuscript comprehensively examines advances reported over the past five years in palladium-catalysed methodologies applied to epigenetic drug discovery. The mechanistic diversity and synthetic adaptability of palladium catalysts for accessing scaffolds addressing the epigenetic targets have been highlighted. The robust drug design strategies and activity profile of the generated small molecule epigenetic inhibitors through palladium-assisted synthetic protocol are also presented in this compilation. Particular emphasis is placed on understanding the influence of ligand structure, base selection, and solvent optimisation in modulating catalyst reactivity. Collectively, this review offers a practical and forward-looking framework for the design and synthesis of next-generation epigenetic anticancer therapeutics (selective/non-selective/hybrid-inhibitors and degraders/PROTACS).

## Linked entities

- **Chemicals:** Palladium (PubChem CID 23938)
- **Diseases:** cancer (MONDO:0004992)

## Full-text entities

- **Genes:** Kdm1a (lysine (K)-specific demethylase 1A) [NCBI Gene 99982] {aka 1810043O07Rik, Aof2, D4Ertd478e, Kdm1, Lsd1, mKIAA0601}, STAT5A (signal transducer and activator of transcription 5A) [NCBI Gene 6776] {aka MGF, STAT5}, VIM (vimentin) [NCBI Gene 7431], KDM1A (lysine demethylase 1A) [NCBI Gene 23028] {aka AIMAH3, AOF2, BHC110, CPRF, KDM1, LSD1}, CCNB1 (cyclin B1) [NCBI Gene 891] {aka CCNB}, Ezh2 (enhancer of zeste 2 polycomb repressive complex 2 subunit) [NCBI Gene 14056] {aka Enx-1, Enx1h, KMT6, mKIAA4065}, Ptprj (protein tyrosine phosphatase receptor type J) [NCBI Gene 19271] {aka BET, Byp, CD148, DEP-1, PTPbeta2, Ptpb2}, DNASE1L3 (deoxyribonuclease 1L3) [NCBI Gene 1776] {aka D3, DHP2, DNAS1L3, LSD, SLEB16}, PARP12 (poly(ADP-ribose) polymerase family member 12) [NCBI Gene 64761] {aka ARTD12, MST109, MSTP109, ZC3H1, ZC3HDC1}, EP300 (EP300 lysine acetyltransferase) [NCBI Gene 2033] {aka KAT3B, MKHK2, RSTS2, p300}, SETD7 (SET domain containing 7, histone lysine methyltransferase) [NCBI Gene 80854] {aka KMT7, SET7, SET7/9, SET9}, PLK1 (polo like kinase 1) [NCBI Gene 5347] {aka PLK, STPK13}, PARP1 (poly(ADP-ribose) polymerase 1) [NCBI Gene 142] {aka ADPRT, ADPRT 1, ADPRT1, ARTD1, PARP, PARP-1}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774] {aka ADMIO, ADMIO1, APRF, HIES}, EREG (epiregulin) [NCBI Gene 2069] {aka EPR, ER, Ep}, BRD4 (bromodomain containing 4) [NCBI Gene 23476] {aka CAP, CDLS6, FSHRG4, HUNK1, HUNKI, MCAP}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, BAX (BCL2 associated X, apoptosis regulator) [NCBI Gene 581] {aka BCL2L4}, ATR (ATR checkpoint kinase) [NCBI Gene 545] {aka FCTCS, FRP1, MEC1, SCKL, SCKL1}, CDK1 (cyclin dependent kinase 1) [NCBI Gene 983] {aka CDC2, CDC28A, P34CDC2}, DNMT3A (DNA methyltransferase 3 alpha) [NCBI Gene 1788] {aka DNMT3A2, HESJAS, M.HsaIIIA, TBRS}, RUNX1 (RUNX family transcription factor 1) [NCBI Gene 861] {aka AML1, AML1-EVI-1, AMLCR1, CBF2alpha, CBFA2, EVI-1}, HDAC6 (histone deacetylase 6) [NCBI Gene 10013] {aka CPBHM, HD6, JM21, KDAC6, PPP1R90}, DNMT3B (DNA methyltransferase 3 beta) [NCBI Gene 1789] {aka FSHD4, ICF, ICF1, M.HsaIIIB}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, YAP1 (Yes1 associated transcriptional regulator) [NCBI Gene 10413] {aka COB1, YAP, YAP-1, YAP2, YAP65, YKI}, HDAC1 (histone deacetylase 1) [NCBI Gene 3065] {aka GON-10, HD1, KDAC1, RPD3, RPD3L1}, TLR3 (toll like receptor 3) [NCBI Gene 7098] {aka CD283, IIAE2, IMD83}, DEFB4A (defensin beta 4A) [NCBI Gene 1673] {aka BD-2, DEFB-2, DEFB102, DEFB2, DEFB4, HBD-2}, DEFB1 (defensin beta 1) [NCBI Gene 1672] {aka BD1, DEFB-1, DEFB101, HBD1}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, EZH2 (enhancer of zeste 2 polycomb repressive complex 2 subunit) [NCBI Gene 2146] {aka ENX-1, ENX1, EZH2b, KMT6, KMT6A, WVS}, CASP3 (caspase 3) [NCBI Gene 836] {aka CPP32, CPP32B, SCA-1}, KRAS (KRAS proto-oncogene, GTPase) [NCBI Gene 3845] {aka 'C-K-RAS, C-K-RAS, CFC2, K-RAS2A, K-RAS2B, K-RAS4A}, WDR5 (WD repeat domain 5) [NCBI Gene 11091] {aka BIG-3, BIG3, CFAP89, SWD3}, DNER (delta/notch like EGF repeat containing) [NCBI Gene 92737] {aka UNQ26, bet}, HDAC5 (histone deacetylase 5) [NCBI Gene 10014] {aka HD5, NY-CO-9}, CREB1 (cAMP responsive element binding protein 1) [NCBI Gene 1385] {aka CREB, CREB-1}, HDAC9 (histone deacetylase 9) [NCBI Gene 9734] {aka HD7, HD7b, HD9, HDAC, HDAC7B, HDAC9B}, PXN (paxillin) [NCBI Gene 5829], MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, TUBA1B (tubulin alpha 1b) [NCBI Gene 10376] {aka K-ALPHA-1}, VHL (von Hippel-Lindau tumor suppressor) [NCBI Gene 7428] {aka HRCA1, RCA1, VHL1, pVHL}, BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596] {aka Bcl-2, PPP1R50}, CREBBP (CREB binding lysine acetyltransferase) [NCBI Gene 1387] {aka CBP, KAT3A, MKHK1, RSTS, RSTS1}, Xrcc6 (X-ray repair cross complementing 6) [NCBI Gene 14375] {aka 70kDa, G22p1, Ku70}, IL17RB (interleukin 17 receptor B) [NCBI Gene 55540] {aka CRL4, EVI27, IL17BR, IL17RH1}, Cd274 (CD274 antigen) [NCBI Gene 60533] {aka A530045L16Rik, B7h1, Pdcd1l1, Pdcd1lg1, Pdl1}, KMT2A (lysine methyltransferase 2A) [NCBI Gene 4297] {aka ALL-1, ALL1, CXXC7, GAS7, HRX, HTRX}, PARP2 (poly(ADP-ribose) polymerase 2) [NCBI Gene 10038] {aka ADPRT2, ADPRTL2, ADPRTL3, ARTD2, PARP-2, pADPRT-2}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, Hdac6 (histone deacetylase 6) [NCBI Gene 15185] {aka Hd6, Hdac5, Sfc6, mHDA2}, HDAC2 (histone deacetylase 2) [NCBI Gene 3066] {aka HD2, KDAC2, RPD3, YAF1}, TMPRSS11D (transmembrane serine protease 11D) [NCBI Gene 9407] {aka ASP, HAT}, BRCA1 (BRCA1 DNA repair associated) [NCBI Gene 672] {aka BRCAI, BRCC1, BROVCA1, FANCS, IRIS, PNCA4}, CDH1 (cadherin 1) [NCBI Gene 999] {aka Arc-1, BCDS1, CD324, CDHE, ECAD, LCAM}, PTPN11 (protein tyrosine phosphatase non-receptor type 11) [NCBI Gene 5781] {aka BPTP3, CFC, JMML, METCDS, NS1, PTP-1D}, IGFBP3 (insulin like growth factor binding protein 3) [NCBI Gene 3486] {aka BP-53, IBP-3, IBP3, IGFBP-3}, DNMT1 (DNA methyltransferase 1) [NCBI Gene 1786] {aka ADCADN, AIM, CXXC9, DNMT, HSN1E, MCMT}
- **Diseases:** dependent (MESH:D019966), lung cancer (MESH:D008175), multiple myeloma (MESH:D009101), Tumour (MESH:D009369), pancreatic cancer (MESH:D010190), prostate cancer (MESH:D011471), GBM (MESH:D005910), melanoma (MESH:D008545), SCLC (MESH:D018288), epithelioid sarcoma (MESH:D012509), hematological malignancies (MESH:D019337), oncogenic malignancies (MESH:D000074723), oncogenesis (MESH:D063646), gastric cancer (MESH:D013274), cytotoxic (MESH:D064420), weight loss (MESH:D015431), AML (MESH:D054218), leukemic (MESH:D007938), CRC (MESH:D015179), T-cell lymphoma (MESH:D016399), metastasis (MESH:D009362), prostate carcinoma (MESH:D011472), solid (MESH:D018250), diffuse large B-cell lymphoma (MESH:D016403), HCC (MESH:D006528), fungal infection (MESH:D009181), leukaemia (MESH:D015458), Candida albicans infections (MESH:D002177), ovarian cancer (MESH:D010051), lymphoma (MESH:D008223), breast cancer (MESH:D001943), TNBC (MESH:D064726)
- **Chemicals:** Hydroxamic Acid (MESH:D006877), Triethylamine (MESH:C016162), ester (MESH:D004952), Acetonitrile (MESH:C032159), THP (MESH:C027260), C (MESH:D002244), dba (MESH:C533260), methyl amine (MESH:C027451), polymers (MESH:D011108), MS-275 (MESH:C118739), Xantphos (MESH:C519861), cinnamate (MESH:D002934), HOBt (MESH:C011852), tamoxifen (MESH:D013629), resorcinol (MESH:C031389), acetophenone (MESH:C038699), ammonium chloride (MESH:D000643), PEG (MESH:D011092), K3PO4 (MESH:C013216), sulphonamide (MESH:D013449), enasidenib (MESH:C000605269), nitrogen (MESH:D009584), beta-cyclodextrin (MESH:C031215), lactam (MESH:D007769), carboxylic acid (MESH:D002264), formic acid (MESH:C030544), GSK126 (MESH:C577920), acid (MESH:D000143), flavone (MESH:C043562), boronic acid (MESH:D001897), 4-bromoaniline (MESH:C023621), caesium fluoride (MESH:C027754), quinazolinone (MESH:D052999), zinc (MESH:D015032), birabresib (MESH:C000605331), bromine (MESH:D001966), Veliparib (MESH:C521013), benzofuran (MESH:C105430), Belinostat (MESH:C487081), Triphenyl phosphine (MESH:C061896), ABBV-075 (MESH:C000621792), acridine (MESH:D000166), chalcone (MESH:D002599), N6-methyladenosine (MESH:C010223), benzamides (MESH:D001549), (4-aminophenyl) boronic acid (MESH:C000599649), acrylate (MESH:C036658), potassium acetate (MESH:D019347), decitabine (MESH:D000077209), ruxolitinib (MESH:C540383), EtOH (MESH:D000431), acrylamide (MESH:D020106), BI-2536 (MESH:C518477), 1,1'-bis(diphenylphosphino)ferrocene (MESH:C519379), DHP (MESH:C038806), HATU (MESH:C472082), PdCl2 (MESH:C008756), benzyl ether (MESH:C076624), NaOH (MESH:D012972), ivosidenib (MESH:C000627630)
- **Species:** Canis lupus familiaris (dog, subspecies) [taxon 9615], Mus musculus (house mouse, species) [taxon 10090], Candida albicans (species) [taxon 5476], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** C-140  C, Y641F, C5 position of cytosine, C for 1-4
- **Cell lines:** MDA-MB-468 — Homo sapiens (Human), Breast adenocarcinoma, Cancer cell line (CVCL_0419), 22RV1 — Homo sapiens (Human), Prostate carcinoma, Cancer cell line (CVCL_1045), A549 — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_0023), MM1S — Homo sapiens (Human), Plasma cell myeloma, Cancer cell line (CVCL_8792), SW1990 — Homo sapiens (Human), Pancreatic adenocarcinoma, Cancer cell line (CVCL_1723), PA-1 — Homo sapiens (Human), Transformed cell line (CVCL_E800), MGC-803 — Homo sapiens (Human), Hybrid cell line (CVCL_5334), HepG2 — Homo sapiens (Human), Hepatoblastoma, Cancer cell line (CVCL_0027), DU145 — Homo sapiens (Human), Prostate carcinoma, Cancer cell line (CVCL_0105), Pfeiffer — Homo sapiens (Human), Diffuse large B-cell lymphoma germinal center B-cell type, Cancer cell line (CVCL_3326), MCF-7 — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_0031), Pt3R — Potorous tridactylus (Potoroo), Spontaneously immortalized cell line (CVCL_0514), B16-F10 — Mus musculus (Mouse), Mouse melanoma, Cancer cell line (CVCL_0159), Karpas-422 — Homo sapiens (Human), Diffuse large B-cell lymphoma germinal center B-cell type, Cancer cell line (CVCL_1325), SNU-16 — Homo sapiens (Human), Gastric adenocarcinoma, Cancer cell line (CVCL_0076), HCT-116 — Homo sapiens (Human), Colon carcinoma, Cancer cell line (CVCL_0291), Kasumi-1 — Homo sapiens (Human), Childhood acute myeloid leukemia with maturation, Cancer cell line (CVCL_0589), H460 — Homo sapiens (Human), Lung large cell carcinoma, Cancer cell line (CVCL_0459), H1299 — Homo sapiens (Human), Lung large cell carcinoma, Cancer cell line (CVCL_0060), T47D — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_0553), Capan-1 — Homo sapiens (Human), Pancreatic ductal adenocarcinoma, Cancer cell line (CVCL_0237), MDA-MB-231 — Homo sapiens (Human), Breast adenocarcinoma, Cancer cell line (CVCL_0062), BT-549 — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_1092), THP-1 — Homo sapiens (Human), Childhood acute monocytic leukemia, Cancer cell line (CVCL_0006), YCC3/7 — Homo sapiens (Human), Gastric adenocarcinoma, Cancer cell line (CVCL_9663), HT-29 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_0320), MV-4-11 — Homo sapiens (Human), Childhood acute monocytic leukemia, Cancer cell line (CVCL_0064), CFPAC-1 — Homo sapiens (Human), Cystic fibrosis, Cancer cell line (CVCL_1119), AsPC-1 — Homo sapiens (Human), Pancreatic ductal adenocarcinoma, Cancer cell line (CVCL_0152), SK-HEP-1 — Homo sapiens (Human), Liver and intrahepatic bile duct epithelial neoplasm, Cancer cell line (CVCL_0525), SKM-1 — Homo sapiens (Human), Adult acute myeloid leukemia, Cancer cell line (CVCL_0098)

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## Figures

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## References

205 references — full list in the complete paper: https://tomesphere.com/paper/PMC12912243/full.md

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Source: https://tomesphere.com/paper/PMC12912243