# Genome-Wide Association Study (GWAS)-Derived Type 2 Diabetes Risk Variants in Gestational Diabetes Mellitus: Evidence From North India

**Authors:** Zoya Shakir, Amita Pandey, Abdulrahman A. Alsayegh, Abrar Fahad Alshahrani, Fauzia Ashfaq, Mohammad Khan, Wahid Ali

PMC · DOI: 10.7759/cureus.101780 · Cureus · 2026-01-18

## TL;DR

This study explores how genetic variants linked to type 2 diabetes may also affect the risk of gestational diabetes in North Indian pregnant women.

## Contribution

The study identifies specific T2DM-related genetic variants associated with gestational diabetes in a North Indian population.

## Key findings

- The AP3S2 rs2028299 A allele increases gestational diabetes risk by 2.26-fold.
- The ST6GAL1 rs16861329 CT genotype and T allele are linked to higher gestational diabetes risk.
- Women with gestational diabetes had higher triglyceride and VLDL levels compared to controls.

## Abstract

Introduction: Gestational diabetes mellitus (GDM) is hyperglycaemia first identified during pregnancy. Because GDM and type 2 diabetes mellitus (T2DM) share insulin resistance and β-cell dysfunction, T2DM variants may also influence the risk of GDM. This study examined the association of three genome-wide association study (GWAS)-identified T2DM variants, AP3S2 rs2028299 (C>A), ST6GAL1 rs16861329 (C>T), and VPS26A rs1802295 (C>T), with GDM susceptibility in pregnant women from North India.

Methods: This observational case-control study was conducted at the tertiary care antenatal clinic of a medical university in Uttar Pradesh, India, and included 69 women with GDM and 69 age- and BMI-matched non-GDM controls. GDM was diagnosed using a one-step 75 g oral glucose tolerance test (OGTT) according to the Diabetes in Pregnancy Study Group India (DIPSI) criteria (DIPSI ≥140 mg/dL). Genotyping of the three variants was performed using polymerase chain reaction followed by Sanger sequencing.

Results: Women with GDM had higher triglyceride (p=0.037) and VLDL (p=0.006) levels than controls. A family history of T2DM was significantly associated with GDM (p=0.024). The AP3S2 A allele increased GDM risk 2.26-fold (OR=2.26, 95% CI: 1.27-4.02, p=0.005). The ST6GAL1 CT genotype (OR=2.30, 95% CI: 1.16-4.58, p=0.017) and T allele (OR=1.95, 95% CI: 1.12-3.41, p=0.018) were also associated with increased GDM risk.

Conclusion: In this North Indian case-control study, rs2028299 (AP3S2) and rs16861329 (ST6GAL1) were significantly associated with GDM, suggesting potential overlap in genetic susceptibility with T2DM. However, functional studies and larger multi-center cohorts are needed to clarify biological mechanisms and confirm generalizability.

## Linked entities

- **Genes:** AP3S2 (adaptor related protein complex 3 subunit sigma 2) [NCBI Gene 10239], ST6GAL1 (ST6 beta-galactoside alpha-2,6-sialyltransferase 1) [NCBI Gene 6480], VPS26A (VPS26 retromer complex component A) [NCBI Gene 9559]
- **Diseases:** gestational diabetes mellitus (MONDO:0005406), type 2 diabetes mellitus (MONDO:0005148)

## Full-text entities

- **Genes:** GRB14 (growth factor receptor bound protein 14) [NCBI Gene 2888], AP3S2 (adaptor related protein complex 3 subunit sigma 2) [NCBI Gene 10239] {aka AP3S3, sigma3b}, HMG20A (high mobility group 20A) [NCBI Gene 10363] {aka HMGX1, HMGXB1}, CSH2 (chorionic somatomammotropin hormone 2) [NCBI Gene 1443] {aka CS-2, CSB, GHB1, PL, hCS-B}, VPS26A (VPS26 retromer complex component A) [NCBI Gene 9559] {aka HB58, Hbeta58, PEP8A, VPS26}, ST6GAL1 (ST6 beta-galactoside alpha-2,6-sialyltransferase 1) [NCBI Gene 6480] {aka CDw75, SIAT1, ST6GalI, ST6N}, INS (insulin) [NCBI Gene 3630] {aka IDDM, IDDM1, IDDM2, ILPR, IRDN, MODY10}, INSR (insulin receptor) [NCBI Gene 3643] {aka CD220, HHF5}, HNF4A (hepatocyte nuclear factor 4 alpha) [NCBI Gene 3172] {aka FRTS4, HNF4, HNF4a7, HNF4a8, HNF4a9, HNF4alpha}
- **Diseases:** insulin resistance (MESH:D007333), cardiovascular or cerebrovascular disease (MESH:D002318), beta-cell dysfunction (MESH:D007340), T2DM (MESH:D003924), Stillbirth (MESH:D050497), DIPSI (MESH:D011254), maternal (MESH:D000079262), IGT (MESH:D018149), hyperglycemia (MESH:D006943), chronic renal or hepatic disorders (MESH:D006521), inflammation (MESH:D007249), Diabetes (MESH:D003920), malignancy (MESH:D009369), GDM (MESH:D016640), obesity (MESH:D009765), non (MESH:C580335)
- **Chemicals:** potassium oxalate (MESH:D019815), TC (-), carbohydrate (MESH:D002241), agarose (MESH:D012685), lipid (MESH:D008055), glucose (MESH:D005947), TG (MESH:D014280), sialic acid (MESH:D019158), EDTA (MESH:D004492), ethidium bromide (MESH:D004996), sodium fluoride (MESH:D012969), water (MESH:D014867), cholesterol (MESH:D002784), progesterone (MESH:D011374), glycolipids (MESH:D006017)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** rs1802295, rs7178572, rs3923113, rs4812829, rs8191974, rs2028299, rs16861329

## Full text

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## References

29 references — full list in the complete paper: https://tomesphere.com/paper/PMC12911466/full.md

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Source: https://tomesphere.com/paper/PMC12911466