# Advances in the pathophysiological study of brain development: application of cerebral organoid combined with Spatial omics technology

**Authors:** Jiayi Wang, Zhaokai Sun, Yiran Zhou, Liang Wang, Jing Liu

PMC · DOI: 10.1186/s13287-025-04885-3 · Stem Cell Research & Therapy · 2026-01-23

## TL;DR

This paper explores how combining cerebral organoids with spatial omics technology improves understanding of brain development and neurodevelopmental diseases.

## Contribution

The novel integration of cerebral organoids and spatial omics technology enables detailed study of brain development and disease mechanisms.

## Key findings

- Cerebral organoids provide a human-specific model for studying brain development and neurodevelopmental diseases.
- Spatial omics technology allows high-resolution analysis of molecular and cellular dynamics in brain tissue.
- The combination facilitates drug screening and identification of disease-specific targets for regenerative therapies.

## Abstract

Understanding the complexities of the human brain development remains one of the most formidable challenges in neuroscience, constrained by the limitations of traditional models and the inaccessibility of brain tissue. The advent of cerebral organoids has provided a transformative in vitro model that closely mimics the early stages of brain development, including the spatiotemporal organization and cellular heterogeneity. Derived from pluripotent stem cells, these self-assembling three-dimensional structures address critical limitations of earlier systems, including species-specific differences in animal studies and the structural constraints of conventional cell models. Over the past decade, cerebral organoids have enabled significant advances in studying neural development, neurogenesis, modeling neuroconnectivity, and investigating neuroregeneration. Meanwhile, high-throughput spatial multi-omics technologies have emerged for decoding molecular and cellular dynamics with spatial precision. These techniques retain the architectural context of biological samples while integrating diverse layers of omic information, providing unprecedented insights into tissue organization and interactions. By addressing the complexity of brain organization and facilitating actionable insights into neurodevelopmental diseases, this integration facilitates high-throughput drug screening, identifies disease-specific targets, and offers a path to novel therapeutic strategies and regenerative solution for future stem cell therapies for pediatric neurodevelopmental diseases.

## Full-text entities

- **Diseases:** neurodevelopmental diseases (MESH:D004194)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

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## References

1 references — full list in the complete paper: https://tomesphere.com/paper/PMC12910980/full.md

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Source: https://tomesphere.com/paper/PMC12910980