# An expert narrative review on the mechanisms and therapeutic potential of gut microbiota-derived metabolites in multi-organ crosstalk

**Authors:** Yushu Zhang, Xuebin Cao, Shihong Xiong, Wenqi Zhen, Yang Yang, Na Gong

PMC · DOI: 10.3389/fendo.2025.1706353 · Frontiers in Endocrinology · 2026-02-03

## TL;DR

This review explores how gut microbes' metabolites affect multiple organs and could lead to new treatments for diseases like heart, kidney, and brain disorders.

## Contribution

The paper provides an integrated analysis of gut microbiota-derived metabolites' roles in multi-organ communication and their therapeutic potential.

## Key findings

- SCFAs improved renal function with moderate evidence (RR=0.85 for composite outcomes).
- SCFAs showed cardio protection and regulation of neuroinflammation.
- Tryptophan metabolites had dual roles in neuroprotection and metabolic dysfunction.

## Abstract

Gut microbiota-derived metabolites—short-chain fatty acids (SCFAs), tryptophan derivatives, and uremic toxins—translocate systemically and mediate multi-organ crosstalk along the gut-kidney-heart-brain-endocrine axis, influencing host physiology and disease. However, integrated mechanistic insights remain limited.

We evaluated the effects of gut microbiota-derived metabolites (intervention) on inter-organ communication and disease outcomes in humans and model systems (population), compared to controls or standard care (comparison).

We conducted a narrative review of studies from PubMed, Cochrane Library, Embase, Web of Science, and ClinicalTrials.gov (2020–2025). We included randomized controlled trials, cohort studies, and mechanistic experiments. Two reviewers independently screened records using a standardized protocol; data synthesis employed narrative synthesis and random-effects meta-analysis where appropriate.

41 included studies (n≈15,000 participants), SCFAs improved renal function (e.g., risk ratio [RR]=0.85 for composite outcomes, 95% CI: 0.72–0.98) with substantial heterogeneity (I²=68%). SCFAs conferred cardio protection and regulated neuroinflammation. Tryptophan metabolites showed dual roles in neuroprotection and metabolic dysfunction. Metabolites demonstrated diagnostic value (e.g., TMAO AUC = 0.87 for cardiovascular risk).

Gut microbiota metabolites are pivotal in multi-organ crosstalk with moderate evidence certainty. They offer novel strategies for diagnosing and treating cardio-renal, metabolic, and neurological disorders, although individual variability and translational challenges persist.

## Linked entities

- **Chemicals:** tryptophan (PubChem CID 1148), TMAO (PubChem CID 1145)
- **Diseases:** neuroinflammation (MONDO:0004466)

## Full-text entities

- **Genes:** NR1I2 (nuclear receptor subfamily 1 group I member 2) [NCBI Gene 8856] {aka BXR, ONR1, PAR, PAR1, PAR2, PARq}, FFAR3 (free fatty acid receptor 3) [NCBI Gene 2865] {aka FFA3R, GPR41}, IL22 (interleukin 22) [NCBI Gene 50616] {aka IL-21, IL-22, IL-D110, IL-TIF, ILTIF, TIFIL-23}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, OCLN (occludin) [NCBI Gene 100506658] {aka BLCPMG, PPP1R115, PTORCH1}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, F3 (coagulation factor III, tissue factor) [NCBI Gene 2152] {aka CD142, TF, TFA}, INS (insulin) [NCBI Gene 3630] {aka IDDM, IDDM1, IDDM2, ILPR, IRDN, MODY10}, KMO (kynurenine 3-monooxygenase) [NCBI Gene 8564] {aka dJ317G22.1}, FFAR2 (free fatty acid receptor 2) [NCBI Gene 2867] {aka FFA2R, GPR43}, CLDN1 (claudin 1) [NCBI Gene 9076] {aka CLD1, ILVASC, SEMP1}, KATNB1 (katanin regulatory subunit B1) [NCBI Gene 10300] {aka KAT, LIS6}, NFE2L2 (NFE2 like bZIP transcription factor 2) [NCBI Gene 4780] {aka IMDDHH, NRF2, Nrf-2}, AHR (aryl hydrocarbon receptor) [NCBI Gene 196] {aka FVH3, RP85, bHLHe76}, SLC2A4 (solute carrier family 2 member 4) [NCBI Gene 6517] {aka GLUT4}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, IDO1 (indoleamine 2,3-dioxygenase 1) [NCBI Gene 3620] {aka IDO, IDO-1, INDO}, CRH (corticotropin releasing hormone) [NCBI Gene 1392] {aka CRF, CRH1}, SULT1A1 (sulfotransferase family 1A member 1) [NCBI Gene 6817] {aka HAST1/HAST2, P-PST, P-PST 1, PST, ST1A1, ST1A3}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, TJP1 (tight junction protein 1) [NCBI Gene 7082] {aka ZO-1}
- **Diseases:** Disease (MESH:D004194), autoimmune and neurodegenerative disorders (MESH:D019636), chronic inflammation (MESH:D007249), cardio-cerebrovascular (MESH:D059347), fibrosis (MESH:D005355), hyperglycemia (MESH:D006943), metabolic syndrome (MESH:D024821), hypertension (MESH:D006973), death (MESH:D003643), PD (MESH:D010300), atherosclerosis (MESH:D050197), neuropsychiatric disorders (MESH:D001523), beta-cell failure (MESH:D051437), renal function decline (MESH:D060825), AD (MESH:D000544), uremic (MESH:D006463), NAFLD (MESH:D065626), cardiovascular disease (MESH:D002318), neurotoxic (MESH:D020258), Dysbiosis (MESH:D064806), diabetes (MESH:D003920), hypertrophy (MESH:D006984), endocrine dysfunction (MESH:D004700), colitis (MESH:D003092), cerebrovascular disease (MESH:D002561), CKD (MESH:D051436), anxiety (MESH:D001007), insulin resistance (MESH:D007333), Neuroinflammatory (MESH:D000090862), type 2 diabetes (MESH:D003924), neuronal damage (MESH:D009410), brain death (MESH:D001926), gestational diabetes (MESH:D016640), inflammatory bowel disease (MESH:D015212), Kidney injury (MESH:D007674), depression (MESH:D003866), neurological diseases (MESH:D020271), obesity (MESH:D009765), cardiac remodeling (MESH:D020257), nephritis (MESH:D009393), stroke (MESH:D020521), systemic (MESH:D015619), cardiac endothelial injury (MESH:D006331), neurological disorders (MESH:D009461), glucose dysregulation (MESH:D018149), dyspepsia (MESH:D004415), renal decline (MESH:D006030), metabolic (MESH:D008659), intestinal barrier impairment (MESH:D007410), UUO (MESH:D014517), proteinuria (MESH:D011507), cognitive decline (MESH:D003072), ulcerative colitis (MESH:D003093), chronic (MESH:D002908), myasthenia gravis (MESH:D009157)
- **Chemicals:** beta-hydroxybutyrate (MESH:D020155), Ecotoxicol (-), hydroxychloroquine (MESH:D006886), TMAO (MESH:C005855), IS (MESH:D007200), sodium (MESH:D012964), kynurenic acid (MESH:D007736), Butyrate (MESH:D002087), p-cresyl sulfate (MESH:C408690), cortisol (MESH:D006854), fructo-oligosaccharides (MESH:C116580), propionate (MESH:D011422), carbohydrates (MESH:D002241), fatty acids (MESH:D005227), labetalol (MESH:D007741), tyrosine (MESH:D014443), Polyphenols (MESH:D059808), polystyrene (MESH:D011137), LPS (MESH:D008070), Acetate (MESH:D000085), Trp (MESH:D014364), Kyn (MESH:D007737), IAA (MESH:C030737), Cellulose (MESH:D002482), Poricoic Acid A (MESH:C455165), IAld (MESH:C012381), creatinine (MESH:D003404), 5-HT (MESH:D012701), glucose (MESH:D005947), Indole (MESH:C030374), FITC-dextran (MESH:C015219), SCFA (MESH:D005232), quinolinic acid (MESH:D017378)
- **Species:** Rattus norvegicus (brown rat, species) [taxon 10116], Bacteroides (genus) [taxon 816], Bifidobacterium (genus) [taxon 1678], Lactobacillus (genus) [taxon 1578], Homo sapiens (human, species) [taxon 9606], Faecalibacterium prausnitzii (species) [taxon 853], Curcuma longa (turmeric, species) [taxon 136217], Codonopsis pilosula (species) [taxon 86864], Roseburia (genus) [taxon 841]
- **Cell lines:** Caco-2 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_0025)

## Full text

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## Figures

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## References

56 references — full list in the complete paper: https://tomesphere.com/paper/PMC12910826/full.md

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Source: https://tomesphere.com/paper/PMC12910826