# Preserving integrity: innovative in vitro methods for extracellular matrix decellularization and collagen purification

**Authors:** Uliana Bashtanova, Rui Li, Ieva Goldberga, Sneha Bansode, Kathryn Gerl, Kristen Paige Burgess, Annika Janine Wegner-Repke, Melinda Jane Duer

PMC · DOI: 10.1186/s13036-025-00617-6 · Journal of Biological Engineering · 2026-01-23

## TL;DR

This paper introduces new methods to purify collagen and remove cells from extracellular matrix while preserving their structure, which could improve tissue engineering and drug development.

## Contribution

The novel methods focus on preserving the structural and biochemical integrity of collagen and extracellular matrix during purification and decellularization.

## Key findings

- Cytoskeleton-targeting drugs effectively dislodge intact cells from ECM-producing cultures.
- Collagen purified with chymotrypsin retains its native triple-helical structure and post-translational modifications.
- The methods are broadly applicable to various cell types for producing species- and tissue-specific ECM and collagen.

## Abstract

In tissue engineering and cell therapy development, synthetic biomaterials are frequently supplemented with collagen or other extracellular matrix (ECM) components to enhance biocompatibility. To support these applications, novel methods for collagen purification and ECM decellularization were developed, with a focus on preserving the structural and biochemical integrity of the final products.

The effectiveness of these methods was validated using solid-state NMR and fluorescence spectroscopy, bright-field and confocal microscopy, amino acid analysis, proteomics and transmission electron microscopy. Intact cells were dislodged from ECM-producing cultures through the application of cytoskeleton-targeting drugs, while the native protein composition of the ECM was maintained. In parallel, collagen purified using chymotrypsin was shown to retain its native triple-helical structure and post-translational modifications.

Both techniques are broadly applicable to various cell types capable of producing collagen and/or ECM in vitro, thereby expanding the availability of species- and tissue-specific sources. These advances hold particular promise for human-relevant tissue engineering and drug discovery applications.

The online version contains supplementary material available at 10.1186/s13036-025-00617-6.

## Linked entities

- **Proteins:** COL3A1 (collagen type III alpha 1 chain), MMRN1 (multimerin 1)

## Full-text entities

- **Genes:** MMRN1 (multimerin 1) [NCBI Gene 22915] {aka ECM, EMILIN4, GPIa*, MMRN}, FN1 (fibronectin 1) [NCBI Gene 280794] {aka FN}, Lamb2 (laminin, beta 2) [NCBI Gene 16779] {aka Lamb-2, Lams, npht}, Lamb1 (laminin B1) [NCBI Gene 16777] {aka D130003D08Rik, Lamb-1, Lamb1-1}, Lamc1 (laminin, gamma 1) [NCBI Gene 226519] {aka Lamb2}, Lama1 (laminin, alpha 1) [NCBI Gene 16772] {aka Lama}, Fgb (fibrinogen beta chain) [NCBI Gene 110135] {aka 2510049G14Rik}, Fgg (fibrinogen gamma chain) [NCBI Gene 99571] {aka 3010002H13Rik}, ECM1 (extracellular matrix protein 1) [NCBI Gene 524222], Nid1 (nidogen 1) [NCBI Gene 18073] {aka A630025O17, Nid, entactin, entactin-1, nidogen-1}, PLEC (plectin) [NCBI Gene 786966], TNC (tenascin C) [NCBI Gene 540664], ELN (elastin) [NCBI Gene 280781], Fga (fibrinogen alpha chain) [NCBI Gene 14161] {aka Fib}
- **Diseases:** BVSMC (MESH:D018235), PSC (MESH:D015209), thrombosis (MESH:D013927), metastasis (MESH:D009362), atherosclerosis (MESH:D050197), cytotoxic (MESH:D064420), fibrosis (MESH:D005355), arteriosclerosis (MESH:D001161), cancer (MESH:D009369)
- **Chemicals:** CO2 (MESH:D002245), Gln (MESH:D005973), bicinchoninic acid (MESH:C047117), chloroform (MESH:D002725), zirconia (MESH:C028541), lipid (MESH:D008055), PBS (MESH:D007854), Tween-20 (MESH:D011136), okadaic acid (MESH:D019319), Trp (MESH:D014364), glucose (MESH:D005947), L-norleucine (MESH:D009646), Hyl (MESH:D006901), ninhydrin (MESH:D009555), argon (MESH:D001128), DIW (-), sodium citrate (MESH:D000077559), glycerol (MESH:D005990), sodium (MESH:D012964), hydroxyproline (MESH:D006909), aspartate (MESH:D001224), urea (MESH:D014508), Amino acid (MESH:D000596), uranyl acetate (MESH:C005460), Phe (MESH:D010649), Leu (MESH:D007930), water (MESH:D014867), phenol (MESH:D019800), Tyr (MESH:D014443), CaCl2 (MESH:D002122), copper (MESH:D003300), SDS (MESH:D012967), L-ascorbic acid (MESH:D001205), HCl (MESH:D006851), Glu (MESH:D018698), Asn (MESH:D001216), Gly (MESH:D005998), 13C (MESH:C000615229), NaOH (MESH:D012972), hyaluronic acid (MESH:D006820), methanol (MESH:D000432), Pro (MESH:D011392), sugar (MESH:D000073893), orthovanadate (MESH:D014638), salt (MESH:D012492), orthophosphate (MESH:D010710), glycans (MESH:D011134), Vinblastine sulphate (MESH:D014747), EDTA (MESH:D004492), Ile (MESH:D007532), ester (MESH:D004952), Triton X-100 (MESH:D017830), carbon (MESH:D002244), Streptomycin (MESH:D013307), Ala (MESH:D000409)
- **Species:** Bos taurus (bovine, species) [taxon 9913], Rattus norvegicus (brown rat, species) [taxon 10116], Homo sapiens (human, species) [taxon 9606], Ovis aries (domestic sheep, species) [taxon 9940], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** BVSMC — Homo sapiens (Human), Finite cell line (CVCL_4009), FSOB — Bos taurus (Bovine), Undefined cell line type (CVCL_J446), PSC4 — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_5622), Engelbreth-Holm-Swarm — Mus musculus (Mouse), Mouse chondrosarcoma, Cancer cell line (CVCL_3506)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12910738/full.md

## References

2 references — full list in the complete paper: https://tomesphere.com/paper/PMC12910738/full.md

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Source: https://tomesphere.com/paper/PMC12910738