# Genetic testing in chronic kidney disease of uneXplained cause (CKDx): clinical insights and evolving diagnostic paradigms

**Authors:** Jan Halbritter, Matias Simons

PMC · DOI: 10.1515/medgen-2025-2046 · Medizinische Genetik · 2026-02-18

## TL;DR

This paper discusses the role of genetic testing in diagnosing chronic kidney disease with unknown causes, highlighting recent advances in methodology.

## Contribution

The paper introduces CKDx as a new diagnostic category and emphasizes updated genetic testing approaches for undiagnosed CKD cases.

## Key findings

- Genetic testing has become a critical tool in diagnosing CKDx cases with previously unknown causes.
- Recent improvements in genetic methodologies are helping clarify complex CKD cases.
- CKDx represents a clinically relevant subgroup of CKD patients requiring targeted genetic evaluation.

## Abstract

Chronic kidney disease (CKD) represents a significant global health burden, with diverse etiologies and often complex clinical presentations. Among these, a notable subset of CKD patients present without a clear underlying cause despite extensive diagnostic evaluation. For this subgroup, the term CKDx – chronic kidney disease of unexplained cause, has recently been proposed. A major element of the diagnostic workup of CKDx is genetic testing, for which the methodology has greatly improved in the last years.

## Linked entities

- **Diseases:** chronic kidney disease (MONDO:0005300)

## Full-text entities

- **Genes:** COL4A4 (collagen type IV alpha 4 chain) [NCBI Gene 1286] {aka ATS2, BFH, BFH1, CA44}, COL4A5 (collagen type IV alpha 5 chain) [NCBI Gene 1287] {aka ASLN, ATS, ATS1, CA54}, MUC1 (mucin 1, cell surface associated) [NCBI Gene 4582] {aka ADMCKD, ADMCKD1, ADTKD2, CA 15-3, CD227, Ca15-3}, APOL1 (apolipoprotein L1) [NCBI Gene 8542] {aka APO-L, APOL, APOL-I, FSGS4}, TRNL1 (tRNA-Leu) [NCBI Gene 4567] {aka MTTL1}, MIR17 (microRNA 17) [NCBI Gene 406952] {aka MIR17-5p, MIR91, MIRN17, MIRN91, hsa-mir-17, miR-17}, COL4A3 (collagen type IV alpha 3 chain) [NCBI Gene 1285] {aka ATS2, ATS3, ATS3A, ATS3B, BFH2}, PKD1 (polycystin 1, transient receptor potential channel interacting) [NCBI Gene 5310] {aka PBP, PC1, Pc-1, TRPP1, eliosin}, NPHP1 (nephrocystin 1) [NCBI Gene 4867] {aka JBTS4, NPH1, SLSN1}, MYH9 (myosin heavy chain 9) [NCBI Gene 4627] {aka BDPLT6, DFNA17, EPSTS, FTNS, MATINS, MHA}, UMOD (uromodulin) [NCBI Gene 7369] {aka ADMCKD2, ADTKD1, FJHN, HNFJ, HNFJ1, MCKD2}
- **Diseases:** hypertension (MESH:D006973), mitochondrial encephalopathy (MESH:C538525), NPH (MESH:C537699), CAKUT (MESH:C566906), glomerulonephritis (MESH:D005921), Alport (MESH:D009394), Symptom (MESH:D012816), GS (MESH:D042822), hemolytic uremic syndrome (MESH:D006463), primary hyperoxalurias (MESH:D006960), MPGN (MESH:D015432), thrombotic microangiopathy (MESH:D057049), Maturity-Onset Diabetes of (MESH:D003924), Genetic kidney diseases (MESH:D007674), Alport syndrome-like (MESH:C562890), MELAS (MESH:D017241), Complement factor 3 glomerulonephritis (MESH:C565169), renal crystal deposition (MESH:D000070657), ES (MESH:D010855), ADTKD (OMIM:162000), ADPKD (MESH:D016891), primary hyperoxaluria type 1 (MESH:C536414), hematuria (MESH:D006417), hereditary nephropathy (MESH:D009386), complement-mediated diseases (MESH:D020274), nephrotic syndrome (MESH:D009404), condition (MESH:D020763), aHUS (MESH:D065766), monogenic diseases (MESH:D004194), Fabry disease (MESH:D000795), metabolic disorders of glucose metabolism (MESH:D044882), CKD (MESH:D051436), like episodes (MESH:C580065), ocular anomalies (MESH:D005124), minimal change disease (MESH:D009402), adult kidney failure (MESH:D051437), lactic acidosis (MESH:D000140), diabetes (MESH:D003920), adenine phosphoribosyltransferase deficiency (MESH:C538228), stroke (MESH:D020521), FSGS (MESH:D005923), MCD (MESH:D012514), renal ciliopathy (MESH:D000072661), sensorineural hearing loss (MESH:D006319), Inherited glomerulopathies (MESH:D030342), hearing loss (MESH:D034381), proteinuria (MESH:D011507), IgA Nephropathy (MESH:D005922)
- **Chemicals:** CRC1324 (-), migalastat (MESH:C090092), steroids (MESH:D013256)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** p.N264K, p.Gly624Asp, 27dupC

## Full text

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## Figures

1 figure with captions in the complete paper: https://tomesphere.com/paper/PMC12910343/full.md

## References

35 references — full list in the complete paper: https://tomesphere.com/paper/PMC12910343/full.md

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Source: https://tomesphere.com/paper/PMC12910343