# Phytochemical profiling, antimicrobial, antibiofilm, and molecular docking of Farsetia aegyptia and Zilla spinosa from Saudi Arabia

**Authors:** Malek Besbes, Assia Hamdi, Mabrouk Horchani, Kaouther Majouli, Amal Dbeibia, Saoussen Jilani, Abeer Ayed Alshammari, Salwa Ahmed Lotfi, Khulood Fahad Alabbosh, Ramzi Hadj Lajimi, Hichem Ben Jannet, Jamil Kraiem, Walid Ben Selma

PMC · DOI: 10.3389/fphar.2025.1723207 · Frontiers in Pharmacology · 2026-02-03

## TL;DR

This study explores the antimicrobial and antibiofilm properties of two Saudi Arabian plants, identifying key compounds that could lead to new anti-infective treatments.

## Contribution

This is the first comprehensive study on the phytochemical composition and antimicrobial activities of Farsetia aegyptia and Zilla spinosa from Saudi Arabia.

## Key findings

- Chloroform and ethanolic extracts of the plants showed strong antibacterial activity against Enterococcus faecalis and Listeria monocytogenes.
- The chloroform extract of Farsetia aegyptia exhibited significant anticandidal and antibiofilm activity against Candida and Staphylococcus aureus.
- GC–MS identified β-sitosterol, stigmasterol, and coumarin as major compounds in Zilla spinosa, with stigmasterol showing strong molecular docking affinity to penicillin-binding protein 4.

## Abstract

Farsetia aegyptia and Zilla spinosa belonging to the Brassicaceae family, well-known for their biological and therapeutic activities.

To our knowledge, this is the first comprehensive study to explore the composition, antibacterial, anticandidal, antibiofilm activities using in vitro, and molecular docking analysis assays of F. aegyptia and Z. spinosa herb extracts collected from the Hail region of Saudi Arabia.

The antibacterial and anticandida effects of chloroform, ethanolic, and aqueous extracts from the aerial parts of F. aegyptia and Z. spinosa were determined by conventional assays. The compositions of extracts were determined by Gas Chromatography–Mass Spectrometry (GC–MS) and High-Resolution Liquid Chromatography–Mass Spectrometry (HR–LC–MS). Molecular docking simulations were carried out with the major identified compounds against penicillin-binding protein 4.

The chloroform and ethanolic extracts of these plants exhibited substantial activities against Enterococcus faecalis ATCC 29212, and Listeria monocytogenes ATCC 19115, with minimum inhibitory concentration (MIC), minimal bactericidal concentration (MBC) levels varying between 625 and 2,500 μg/mL, and MBC/MIC was equal to 1. The chloroformic extract of F. aegyptia demonstrated the most significant anticandidal activity against Candida albicans ATCC 90028 and Candida krusei ATCC 6258, with MIC of 625 μg/mL. Interestingly, the chloroform extract of F. aegyptia demonstrated the most important antibiofilm activity against Staphylococcus aureus, with Minimum Biofilm Inhibition Concentration (MBIC50) of 700 μg/mL, while the chloroform extract of Z. spinosa showed the most potent antibiofilm activity against Pseudomonas aeruginosa ATCC 27853 with MBIC50 = 630 μg/mL. Candida albicans showed the highest sensitivity to the ethanolic extract of Z. spinosa, with MBIC50 = 660 μg/mL. The GC–MS analysis identified β-sitosterol (40.39%), stigmasterol (22.24%), and coumarin (9.25%), as the main components of Z. spinosa; and linolenic acid (12.68%), linolenic acid ethyl ester (7.31%), arachidonic acid (6.96%), and (Z)-13-docosenamide (6.47%) as predominant compounds in F. aegyptia. The docking analysis revealed that the key compound stigmasterol from Z. spinosa served as superior ligands, penicillin-binding protein four (PBP4) (−7.7 kcal/mol).

These findings highlight the powerful antimicrobial and antibiofilm activities of F. aegyptia and Z. spinosa, and supporting their prospective role in developing novel anti-infective agents.

## Linked entities

- **Chemicals:** β-sitosterol (PubChem CID 222284), stigmasterol (PubChem CID 5280794), coumarin (PubChem CID 323), linolenic acid (PubChem CID 5280934), linolenic acid ethyl ester (PubChem CID 5367460), arachidonic acid (PubChem CID 444899), (Z)-13-docosenamide (PubChem CID 5365371)
- **Species:** Enterococcus faecalis (taxon 1351), Listeria monocytogenes (taxon 1639), Candida albicans (taxon 5476), Staphylococcus aureus (taxon 1280), Pseudomonas aeruginosa (taxon 287)

## Full-text entities

- **Diseases:** AD (MESH:D000544), cancer (MESH:D009369), diabetes (MESH:D003920), Corynebacterium striatum (MESH:D003354), pancreatic and hepatic pain (MESH:D010195), inflammatory (MESH:D007249), ET (MESH:D016751), respiratory infections (MESH:D012141), gallbladder problems (MESH:D005705), rheumatic pains (MESH:D010146), microbial infections (MESH:D015163), diarrhea (MESH:D003967), biofilm infections (MESH:D007239), urinary tract pain (MESH:D014552), cytotoxic (MESH:D064420), kidney stones (MESH:D007669), nosocomial infections (MESH:D003428), deaths (MESH:D003643), Infectious Diseases (MESH:D003141), bacterial infections (MESH:D001424)
- **Chemicals:** coumaric acid (MESH:D003373), polyols (MESH:C024617), polysaccharide (MESH:D011134), carboxylic acids (MESH:D002264), dichloromethane (MESH:D008752), Beta-sitosterol (MESH:C025473), Ciprofloxacin (MESH:D002939), agar (MESH:D000362), acetonitrile (MESH:C032159), loliolide (MESH:C030425), ceftaroline (MESH:C490727), Phytosterols (MESH:D010840), carbon (MESH:D002244), brassinolides (MESH:C023623), linoleic acid (MESH:D019787), methanol (MESH:D000432), Pi (MESH:D010716), embelin (MESH:C010945), acetogenins (MESH:D054378), cyclic peptides (MESH:D010456), formic acid (MESH:C030544), Benzofuran (MESH:C105430), phytol (MESH:D010836), brassinosteroids (MESH:D060406), quassinoids (MESH:D036702), glucosinolates (MESH:D005961), alkaloids (MESH:D000470), cholesterol (MESH:D002784), ethanol (MESH:D000431), retronecine (MESH:C014795), water (MESH:D014867), linolenic acid ethyl ester (MESH:C039896), Linolenic acid (MESH:D017962), p-benzoquinones (MESH:D016227), phenolic acids (MESH:C017616), arachidonic acid (MESH:D016718), friedelin (MESH:C060796), indoles (MESH:D007211), Terpene (MESH:D013729), coumarin (MESH:C030123), petroleum ether (MESH:C004544), essential oils (MESH:D009822), Amphotericin B (MESH:D000666), macrolides (MESH:D018942), tannins (MESH:D013634), triterpenoids (MESH:D014315), amines (MESH:D000588), cyclolaudenol (MESH:C024016), acetone (MESH:D000096), carbohydrates (MESH:D002241), Fatty acids (MESH:D005227), Cefalotin (MESH:D002512), aluminum (MESH:D000535), ethyl acetate (MESH:C007650), 3-tert-Butyl-5-methylcatechol (-), helium (MESH:D006371), crystal violet (MESH:D005840), hexanoic acid (MESH:C037652), Safranin (MESH:C009195), 13-docosenamide (MESH:C049508)
- **Species:** Pseudomonas aeruginosa (species) [taxon 287], Thymus vulgaris (common thyme, species) [taxon 49992], Teucrium polium (species) [taxon 1117157], Klebsiella pneumoniae (species) [taxon 573], Salmonella enterica subsp. enterica serovar Enteritidis (no rank) [taxon 149539], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Candida albicans (species) [taxon 5476], Escherichia coli (E. coli, species) [taxon 562], Pichia kudriavzevii (species) [taxon 4909], Farsetia hamiltonii [taxon 2358338], Thymbra capitata (conehead thyme, species) [taxon 543980], Salmonella enterica subsp. enterica serovar Typhimurium (no rank) [taxon 90371], Cinnamomum verum (Ceylon cinnamon, species) [taxon 128608], Listeria monocytogenes ATCC 19115 (strain) [taxon 176281], Enterococcus faecalis (species) [taxon 1351], Farsetia stylosa (species) [taxon 1366957], Uvaria scheffleri (species) [taxon 2588162], Staphylococcus aureus (species) [taxon 1280], Zilla spinosa (species) [taxon 127626], Mycobacterium tuberculosis (species) [taxon 1773], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Homo sapiens (human, species) [taxon 9606], Listeria monocytogenes (species) [taxon 1639], Astragalus (genus) [taxon 20400], Enterococcus faecalis ATCC 29212 (strain) [taxon 1201292], Farsetia heliophila (species) [taxon 691206], Farsetia aegyptia (species) [taxon 359842], Acinetobacter baumannii (species) [taxon 470]
- **Mutations:** H35 N, H33 N, H39 N, (A) at 595, H19 N, H41 N, C at 10, Gly621, Thr622, Ser637, Ser658, H13 N, H37 N
- **Cell lines:** ATCC 14080 — Homo sapiens (Human), Spina bifida, Transformed cell line (CVCL_9R52), ATCC 25923 — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_0023), ATCC 19115 — Homo sapiens (Human), Transformed cell line (CVCL_0X39), ATCC 14116 — Homo sapiens (Human), Cri du chat syndrome, Transformed cell line (CVCL_V992), ATCC 27853 — Homo sapiens (Human), Transformed cell line (CVCL_ZH96), ATCC 90028 — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_C6PI), C.a — Mus musculus (Mouse), Finite cell line (CVCL_S361)

## Full text

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## Figures

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## References

88 references — full list in the complete paper: https://tomesphere.com/paper/PMC12910216/full.md

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Source: https://tomesphere.com/paper/PMC12910216