# Platelet-activating factor modulates apoptotic gene expression in developing sea urchin embryos

**Authors:** Shohom Saha, Aaron Cho, Caroline Smith, William E. Roudebush, Renee J. Chosed

PMC · DOI: 10.3389/fcell.2026.1728206 · 2026-02-03

## TL;DR

This study explores how Platelet-activating factor influences gene expression related to cell death in early sea urchin embryos.

## Contribution

The novel finding is that PAF modulates both pro- and anti-apoptotic genes in a biphasic pattern during early embryonic development.

## Key findings

- PAF increases expression of pro-apoptotic caspase genes across all time points.
- PAF also upregulates anti-apoptotic genes in a biphasic manner.
- The results suggest complex regulation of apoptosis to prevent excessive cell death during development.

## Abstract

Examining gene expression patterns during early embryonic development is essential for understanding genetic disorders and fertility. The accessibility, cost-effectiveness, and reproducibility of sea urchin embryos have offered an effective model for studying how gene expression is regulated in early embryogenesis under the influence of specific growth factors. However, regulation of apoptotic gene expression by growth factors, such as Platelet-Activating Factor (PAF), during early embryogenesis remains unexamined. This study investigated the role of PAF during the first 4 hours post-fertilization in sea urchin (Lytechinus variegatus) embryos. Using quantitative real-time polymerase chain reaction (qRT-PCR), we analyzed expression patterns of apoptosis-promoting genes (CASP3, CASP7 and CASP8) and apoptosis-inhibiting genes (BCL2A1, NFKBIA, NFKBIZ) in PAF-treated and untreated embryos collected at 20-min intervals for up to 240 min of development post-fertilization. This study revealed that PAF increases the expression of both pro-apoptotic caspase genes across all time points and anti-apoptotic genes in a biphasic manner. Our results demonstrate complex regulatory mechanisms that maintain the function of apoptotic machinery while preventing excessive cell death during critical early developmental stages.

## Linked entities

- **Genes:** CASP3 (caspase 3) [NCBI Gene 836], CASP7 (caspase 7) [NCBI Gene 840], CASP8 (caspase 8) [NCBI Gene 841], BCL2A1 (BCL2 related protein A1) [NCBI Gene 597], NFKBIA (NFKB inhibitor alpha) [NCBI Gene 4792], NFKBIZ (NFKB inhibitor zeta) [NCBI Gene 64332]
- **Chemicals:** Platelet-Activating Factor (PubChem CID 108156), PAF (PubChem CID 108156)
- **Species:** Lytechinus variegatus (taxon 7654)

## Full-text entities

- **Genes:** NFKBIA (NFKB inhibitor alpha) [NCBI Gene 4792] {aka EDAID2, IKBA, MAD-3, NFKBI}, CASP8 (caspase 8) [NCBI Gene 841] {aka ALPS2B, CAP4, Casp-8, FLICE, MACH, MCH5}, PCLAF (PCNA clamp associated factor) [NCBI Gene 9768] {aka KIAA0101, L5, NS5ATP9, OEATC, OEATC-1, OEATC1}, BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596] {aka Bcl-2, PPP1R50}, BCL2A1 (BCL2 related protein A1) [NCBI Gene 597] {aka ACC-1, ACC-2, ACC1, ACC2, BCL2L5, BFL1}, CASP3 (caspase 3) [NCBI Gene 836] {aka CPP32, CPP32B, SCA-1}, NFKBIZ (NFKB inhibitor zeta) [NCBI Gene 64332] {aka I-kappa-B-zeta, IKBZ, INAP, IkappaB-zeta, MAIL, ikB-zeta}, CASP7 (caspase 7) [NCBI Gene 840] {aka CASP-7, CMH-1, ICE-LAP3, LICE2, MCH3}
- **Diseases:** developmental disorders (MESH:D002658), infertility (MESH:D007246), genetic disorders (MESH:D030342), developmental abnormalities (MESH:D006130)
- **Chemicals:** potassium chloride (MESH:D011189), oil (MESH:D009821), phospholipid (MESH:D010743)
- **Species:** Oryctolagus cuniculus (domestic rabbit, species) [taxon 9986], Bos taurus (bovine, species) [taxon 9913], Lytechinus variegatus (green sea urchin, species) [taxon 7654], Homo sapiens (human, species) [taxon 9606], Paracentrotus lividus (common sea urchin, species) [taxon 7656], Echinoidea (sea urchin, class) [taxon 7625], Mus musculus (house mouse, species) [taxon 10090]

## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12909567/full.md

---
Source: https://tomesphere.com/paper/PMC12909567