# Studies on the functionality of the TC-NER ERCC6-M1097V protein variant frequently found in Louisiana patients with PCa upon UV damage

**Authors:** Oluwatobi Ogundepo, Arrigo De Benedetti

PMC · DOI: 10.3389/fonc.2025.1679379 · 2026-02-03

## TL;DR

This study investigates how a specific ERCC6 protein variant, M1097V, affects DNA repair and cancer risk in Louisiana African American men with prostate cancer.

## Contribution

The paper explores the functional impact of the ERCC6-M1097V variant and proposes a synthetic lethality strategy for prostate cancer treatment.

## Key findings

- The M1097V variant increases cellular tolerance to UV damage, potentially increasing mutagenesis risk.
- ERCC6 mutations like S636N may alter DNA repair activity, though their effects are not fully understood.
- A synthetic lethality strategy targeting TC-NER and HRR pathways could be effective for treating prostate cancer.

## Abstract

ERCC6, also known as CSB (Cockayne Syndrome B), is a key protein involved in transcription-coupled nucleotide excision repair (TC-NER), a DNA repair process that removes lesions blocking RNA polymerase. ERCC6’s multifaceted roles include chromatin remodeling, transcription regulation, oxidative stress response, and coordination with other DNA repair proteins. Mutations in ERCC6 lead to Cockayne Syndrome and other neurodegenerative disorders, but some variants, such as M1097V, have been associated with cancer risk, particularly prostate cancer (PCa) in African Americans (AAs) in Louisiana. Recent studies have explored the functional impact of ERCC6 variants in PCa, especially among AAs, who face higher incidence and more aggressive forms of the disease. A notable finding is that the M1097V variant increases cellular tolerance to UV damage, suggesting not only a possible evolutionary benefit but also a potential risk for mutagenesis when exposed to complex environmental carcinogens. Other ERCC6 mutations, such as S636N (also only found in Louisiana PCa), located near regulatory regions, may alter repair activity, though their effects remain unclear. Given the high mutation burden in mismatch repair (MMR) and NER genes observed in AA patients with PCa, a synthetic lethality strategy targeting both TC-NER and homologous recombination repair (HRR) pathways could be effective. This includes combining agents like CDDP (cisplatin) with inhibitors of RAD54, such as J54. These approaches may offer alternatives to androgen deprivation therapy (ADT), which is often ineffective in advanced or treatment-resistant PCa common among AA men. This work underscores the importance of integrating genetic, environmental, and therapeutic insights to address PCa disparities.

## Linked entities

- **Genes:** ERCC6 (ERCC excision repair 6, chromatin remodeling factor) [NCBI Gene 2074], ATRX (ATRX chromatin remodeler) [NCBI Gene 546]
- **Proteins:** ERCC6 (ERCC excision repair 6, chromatin remodeling factor), CSH2 (chorionic somatomammotropin hormone 2), ATRX (ATRX chromatin remodeler)
- **Chemicals:** CDDP (PubChem CID 5460033), J54 (PubChem CID 24820112)
- **Diseases:** Cockayne Syndrome (MONDO:0016006), prostate cancer (MONDO:0005159)

## Full-text entities

- **Genes:** CPD (carboxypeptidase D) [NCBI Gene 1362] {aka GP180}, Mlh1 (mutL homolog 1) [NCBI Gene 17350] {aka 1110035C23Rik}, POLI (DNA polymerase iota) [NCBI Gene 11201] {aka RAD30B, RAD3OB, eta2}, Brca1 (breast cancer 1, early onset) [NCBI Gene 12189], ERCC8 (ERCC excision repair 8, CSA ubiquitin ligase complex subunit) [NCBI Gene 1161] {aka CKN1, CSA, UVSS2}, ERCC6 (ERCC excision repair 6, chromatin remodeling factor) [NCBI Gene 2074] {aka ARMD5, CKN2, COFS, COFS1, CSB, CSB-PGBD3}, NEK4 (NIMA related kinase 4) [NCBI Gene 6787] {aka NRK2, STK2, pp12301}, Ercc6 (excision repair cross-complementing rodent repair deficiency, complementation group 6) [NCBI Gene 319955] {aka 4732403I04, C130058G22Rik, CSB}, TLK1 (tousled like kinase 1) [NCBI Gene 9874] {aka PKU-beta}, DNAH8 (dynein axonemal heavy chain 8) [NCBI Gene 1769] {aka ATPase, SPGF46, hdhc9}, ERCC5 (ERCC excision repair 5, endonuclease) [NCBI Gene 2073] {aka COFS3, ERCC5-201, ERCM2, UVDR, XPG, XPGC}, Fdxr (ferredoxin reductase) [NCBI Gene 14149] {aka AR}, ERCC3 (ERCC excision repair 3, TFIIH core complex helicase subunit) [NCBI Gene 2071] {aka BTF2, GTF2H, RAD25, Ssl2, TFIIH, TTD2}, RAD54L (RAD54 like) [NCBI Gene 8438] {aka HR54, RAD54A, hHR54, hRAD54}, Trp53-ps (transformation related protein 53, pseudogene) [NCBI Gene 22060], Ar (androgen receptor) [NCBI Gene 11835] {aka Tfm}, Atm (ataxia telangiectasia mutated) [NCBI Gene 11920] {aka C030026E19Rik}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, NEK1 (NIMA related kinase 1) [NCBI Gene 4750] {aka ALS24, NY-REN-55, OFD2, SRPS2, SRPS2A, SRTD6}, UVSSA (UV stimulated scaffold protein A) [NCBI Gene 57654] {aka KIAA1530, UVSS3}
- **Diseases:** progeria (MESH:D011371), prostate tumors (MESH:D011472), renal toxicity (MESH:D007674), non-cutaneous malignancy (MESH:C562393), mutagenic toxicity (MESH:D064420), carcinogens (MESH:D011230), AA (MESH:C537904), Cockayne Syndrome (MESH:D003057), autosomal recessive disorder (MESH:D030342), Metastatic castration-resistant prostate cancer (MESH:D064129), cancer (MESH:D009369), AD (MESH:D000544), growth failure (MESH:D051437), neurodevelopmental and progeroid syndromes (MESH:C536423), AA-PCa (MESH:D011471), neurodegeneration (MESH:D019636)
- **Chemicals:** benzopyrene (MESH:D001580), ATP (MESH:D000255), Agarose (MESH:D012685), taxanes (MESH:D043823), 8-oxoguanine (MESH:C024829), CPDs (MESH:C007077), 5OG (-), CDDP (MESH:D002945), TAE buffer (MESH:C115179), SDS (MESH:D012967), acetic acid (MESH:D019342), silver (MESH:D012834), ICLs (MESH:C009813), cyclobutane (MESH:D003503), MB (MESH:D008751), water (MESH:D014867), cyclobutane pyrimidine dimer (MESH:D011740), EDTA disodium salt (MESH:D004492), ADP (MESH:D000244), radium-223 (MESH:C000615150), platinum (MESH:D010984)
- **Species:** Homo sapiens (human, species) [taxon 9606], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Mus musculus (house mouse, species) [taxon 10090], Callitrichinae sp. (species) [taxon 38020], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Escherichia coli (E. coli, species) [taxon 562]
- **Mutations:** M1097V, S636N, S636N, Y776C
- **Cell lines:** PC3 — Homo sapiens (Human), Prostate carcinoma, Cancer cell line (CVCL_0035), C42B — Homo sapiens (Human), Floor of mouth squamous cell carcinoma, Cancer cell line (CVCL_WI17), Hek293 — Homo sapiens (Human), Transformed cell line (CVCL_0045), DU145 — Homo sapiens (Human), Prostate carcinoma, Cancer cell line (CVCL_0105), 293T — Homo sapiens (Human), Transformed cell line (CVCL_0063), PCa2 — Homo sapiens (Human), Prostate carcinoma, Cancer cell line (CVCL_4747)

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12909189/full.md

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Source: https://tomesphere.com/paper/PMC12909189