# Dual Proteasome and Histone Deacetylase Inhibition Overcomes Tyrosine Kinase Inhibitor Resistance in Breakpoint Cluster Region: Abelson 1‐Driven Leukaemia Cell Lines

**Authors:** Seiichi Okabe, Seiichiro Yoshizawa, Yuya Arai, Akihiko Gotoh, Daigo Akahane

PMC · DOI: 10.1111/jcmm.71053 · 2026-02-16

## TL;DR

Combining proteasome and histone deacetylase inhibitors can kill drug-resistant leukemia cells driven by the BCR::ABL1 fusion protein.

## Contribution

A novel dual-inhibition strategy is proposed to overcome resistance to tyrosine kinase inhibitors in BCR::ABL1-driven leukemia.

## Key findings

- Bortezomib and panobinostat induced strong cytotoxicity and apoptosis in TKI-resistant leukemia cells.
- The drug combination suppressed clonogenic growth and mitochondrial function in resistant cells.
- The dual inhibition approach offers a TKI-independent treatment for multidrug-resistant CML.

## Abstract

Resistance to tyrosine kinase inhibitors (TKIs) remains a major challenge in breakpoint cluster region (BCR)::Abelson 1 (ABL1)‐driven leukaemias. Asciminib offers a novel therapeutic option; however, resistance continues to emerge. We hypothesised that targeting proteostasis and epigenetic regulation with bortezomib and panobinostat could eliminate TKI‐refractory cells via TKI‐independent mechanisms. We profiled parental and TKI‐resistant chronic myelogenous leukaemia (CML) and Ba/F3 models. Viability, cytotoxicity, and caspase‐3/7 activity were assessed following single‐agent treatment with asciminib, ponatinib, bortezomib, or panobinostat. The effects of the bortezomib–panobinostat combination on colony formation, mitochondrial membrane potential, and apoptosis were evaluated. Asciminib showed reduced potency in resistant models and a right‐shifted dose–response curve in T315I cells, whereas ponatinib retained activity across BCR::ABL1 variants. Bortezomib and panobinostat induced low‐nanomolar cytotoxicity and robust caspase‐3/7 activation in resistant lines. The combination of bortezomib and panobinostat showed modest trends toward reduced cell viability and increased cytotoxicity and caspase‐3/7 activity, especially in TKI‐resistant cells. The combination suppressed clonogenic growth and triggered apoptosis in resistant cells. Co‐inhibition of proteasomes and histone deacetylases eliminates TKI‐refractory BCR::ABL1‐driven leukaemia cells by inducing mitochondrial apoptosis and loss of clonogenic potential. These findings indicate a clinically actionable, TKI‐independent strategy for the salvage treatment of multidrug‐resistant CML.

## Linked entities

- **Genes:** BCR (BCR activator of RhoGEF and GTPase) [NCBI Gene 613], ABL1 (ABL proto-oncogene 1, non-receptor tyrosine kinase) [NCBI Gene 25]
- **Chemicals:** asciminib (PubChem CID 72165228), ponatinib (PubChem CID 24826799), bortezomib (PubChem CID 387447), panobinostat (PubChem CID 6918837)
- **Diseases:** leukaemia (MONDO:0004355)

## Full-text entities

- **Genes:** Abl1 (Abl proto-oncogene 1, non-receptor tyrosine kinase) [NCBI Gene 11350] {aka Abl, E430008G22Rik, c-Abl}, TXK (TXK tyrosine kinase) [NCBI Gene 7294] {aka BTKL, PSCTK5, PTK4, RLK, TKL}, ANXA5 (annexin A5) [NCBI Gene 308] {aka ANX5, CPB-I, ENX2, HEL-S-7, PP4, RPRGL3}, BCR (BCR activator of RhoGEF and GTPase) [NCBI Gene 613] {aka ALL, BCR1, CML, D22S11, D22S662, PHL}, HMBS (hydroxymethylbilane synthase) [NCBI Gene 3145] {aka ENCEP, LENCEP, PBG-D, PBGD, PORC, UPS}, HDAC9 (histone deacetylase 9) [NCBI Gene 9734] {aka HD7, HD7b, HD9, HDAC, HDAC7B, HDAC9B}, ABL1 (ABL proto-oncogene 1, non-receptor tyrosine kinase) [NCBI Gene 25] {aka ABL, BCR-ABL, CHDSKM, JTK7, bcr/abl, c-ABL}, SKP2 (S-phase kinase associated protein 2) [NCBI Gene 6502] {aka FBL1, FBXL1, FLB1, p45}, CDKN1B (cyclin dependent kinase inhibitor 1B) [NCBI Gene 1027] {aka CDKN4, KIP1, MEN1B, MEN4, P27KIP1}, Ttll5 (tubulin tyrosine ligase-like family, member 5) [NCBI Gene 320244] {aka 1700048H13Rik, 2310009M18Rik, 4930556H18Rik, D630041K24Rik, Stamp, mKIAA0998}, Il3 (interleukin 3) [NCBI Gene 16187] {aka BPA, Csfmu, HCGF, Il-3, MCGF, PSF}
- **Diseases:** Chronic myeloid leukaemia (MESH:D015451), mitochondrial depolarisation (MESH:D028361), multiple myeloma (MESH:D009101), Cancer (MESH:D009369), CML (MESH:D015464), AML (MESH:D015470), myelodysplastic syndromes (MESH:D009190), hematologic malignancies (MESH:D019337), acute leukaemia (MESH:D054218), Cytotoxicity (MESH:D064420), lymphoma (MESH:D008223), Leukaemia (MESH:D015458), Philadelphia chromosome (MESH:D010677)
- **Chemicals:** Ponatinib (MESH:C545373), belinostat (MESH:C487081), Asciminib (MESH:C000621806), streptomycin (MESH:D013307), methylcellulose (MESH:D008747), imatinib (MESH:D000068877), Panobinostat (MESH:D000077767), Bortezomib (MESH:D000069286), CCK-8 (-), PI (MESH:D011419), JC-1 (MESH:C068624), penicillin (MESH:D010406), ATP (MESH:D000255), CO2 (MESH:D002245), DMSO (MESH:D004121)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** T315I
- **Cell lines:** Ba/F3 — Mus musculus (Mouse), Factor-dependent cell line (CVCL_0161), Ba/F3 asc-R — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_YA87), K562 — Homo sapiens (Human), Blast phase chronic myelogenous leukemia, BCR-ABL1 positive, Cancer cell line (CVCL_0004), F3 — Homo sapiens (Human), Transformed cell line (CVCL_LJ44), WEHI-3 — Mus musculus (Mouse), Mouse leukemia, Cancer cell line (CVCL_3622), -8 — Xenopus laevis (African clawed frog), Spontaneously immortalized cell line (CVCL_4564)

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12908417/full.md

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Source: https://tomesphere.com/paper/PMC12908417