# Ecological composite fertilizer application enhances wheat yield and optimizes rhizosphere microbial community under reduced fertilization

**Authors:** Yu Wang, Xinhao Luo, Meiling Ping, Haining Wang, Yueming Bao, Chuansheng Zhao, Xiaoyu Li, Jin Chen

PMC · DOI: 10.3389/fpls.2026.1771450 · 2026-02-02

## TL;DR

Using ecological composite fertilizer with reduced traditional fertilizer boosts wheat yield and improves soil microbes, supporting sustainable farming.

## Contribution

A novel strategy combining reduced fertilizer with ecological composite fertilizer to enhance wheat yield and microbial diversity.

## Key findings

- The TF85+ECF treatment increased wheat yield by 30.63% compared to reduced fertilizer alone.
- ECF application enhanced carbon and nitrogen cycling enzymes and key functional genes in soil.
- ECF improved microbial network complexity and identified beneficial keystone taxa linked to soil health.

## Abstract

Excessive fertilization poses a major threat to sustainable agriculture, resulting in resource waste and environmental degradation. The ecological composite fertilizer (ECF) combined with fertilizer reduction represents a promising strategy to improve rhizosphere microbial diversity in wheat systems. A field experiment, containing six treatments, namely traditional compound fertilizer (TF, applied at the conventional rate) with a 10% reduction (TF90), TF90 plus ECF application (TF90+ECF), TF with a 15% reduction (TF85), TF85 plus ECF application (TF85+ECF), TF with a 20% reduction (TF80), and TF80 plus ECF application (TF80+ECF), was conducted to explore the influences of fertilizer reduction combined with ECF application on wheat yield and rhizosphere soil microbial diversity. Results showed that the TF85+ECF treatment achieved the highest wheat yield at 8,717.33 kg ha−1, which was significantly greater than all other treatments and represented a 30.63% increase over the TF85 treatment. The TF85+ECF group significantly enhanced the activities of the carbon and nitrogen cycling enzymes β-1, 4-glucosidase glucosidase (BG) and urease (UE), and increased the abundances of the functional genes cbbLR and amoA. In the +ECF treatment groups (TF90+ECF, TF85+ECF, and TF80+ECF), linear discriminant analysis effect size (LEfSe) and specialization-occupancy (SPEC-OCCU) analyses identified keystone microbial taxa, including positively correlated taxa with biocontrol and metabolic versatility (e.g., Trichoderma, Solicoccozyma) and negatively correlated potential pathogens (e.g., Alternaria). Co-occurrence network analysis revealed that the TF85+ECF group streamlined bacterial network architecture while enhanced fungal network complexity and connectivity. Mantel tests and correlation analyses indicated that soil organic carbon, BG activity, and cbbLR gene abundance were significantly linked to microbial community structure, and keystone taxa were strongly correlated with soil nutrient cycling functions. Our findings provide a microbiome-based strategy and a novel perspective for sustainable wheat production and targeted microbial management in agriculture.

## Linked entities

- **Genes:** amoA (amonabactin biosynthesis protein AmoA) [NCBI Gene 4488097]
- **Species:** Trichoderma (taxon 5543), Solicoccozyma (taxon 1851575), Alternaria (taxon 5598)

## Full-text entities

- **Genes:** ACSBG1 (acyl-CoA synthetase bubblegum family member 1) [NCBI Gene 23205] {aka BG, BG1, BGM, GR-LACS, LPD}
- **Chemicals:** TF (-), carbon (MESH:D002244), nitrogen (MESH:D009584)
- **Species:** Trichoderma (genus) [taxon 5543], Solicoccozyma (genus) [taxon 1851575], Alternaria sect. Alternaria (section) [taxon 2499237]

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12907401/full.md

---
Source: https://tomesphere.com/paper/PMC12907401