# Unraveling the difference in aroma characteristics of tomato flesh with different colors using HS-SPME-GC–MS/MS and E-nose combined with multivariate data analysis

**Authors:** Junrong Xu, Yushi Lu, Jing Cui, Yunzhi Liu, Wenjin Yu, Changxia Li

PMC · DOI: 10.1016/j.fochx.2026.103594 · 2026-01-30

## TL;DR

This study identifies 154 volatile compounds in tomatoes of different colors and finds 16 key compounds that may explain flavor differences, using advanced analytical and machine learning techniques.

## Contribution

The study combines HS-SPME-GC–MS/MS, E-nose, and LightGBM to identify color-specific aroma compounds in tomatoes, revealing 16 VOCs linked to fruit color.

## Key findings

- 154 volatile organic compounds were identified in 16 tomato varieties with four different fruit colors.
- Twenty-six VOCs were found to significantly contribute to tomato aroma based on odor activity values.
- Multivariate analysis identified 16 VOCs strongly associated with fruit color, aiding flavor evaluation and improvement.

## Abstract

Aroma profiles of tomato flesh from 16 tomato varieties with 4 different fruit colors were characterized by headspace-solid phase microextraction coupled with gas chromatography-triple quadrupole mass spectrometry (HS-SPME-GC–MS/MS) and electronic nose (E-nose). A total of 154 volatile organic compounds (VOCs) were qualitatively and semi-quantitatively identified, including 29 aldehydes, 22 hydrocarbons, 21 alcohols, 32 unknown compounds, and others, with aldehydes being the most abundant. Twenty-six characteristic VOCs might be major contributors to tomato flavor by relative odor activity value analysis. The correlation between E-nose sensor responses and GC–MS/MS volatile profiles was also examined. The machine learning models were constructed to show potential for distinguishing the fruit colors of the tomato. Finally, 16 fruit color-indicating VOCs were selected via multivariate data analysis. The present study will contribute to flavor evaluation and provide a chemical basis for future tomato flavor improvement, to be accompanied by sensory validation.

•HS-SPME-GC–MS/MS identified 154 VOCs in the flesh of 16 tomato varieties.•Twenty-six characteristic volatiles contributed to various aroma notes.•E-nose and GC–MS/MS combined with LightGBM showed potential to classify fruit colors.•Multivariate data analysis uncovered 16 fruit color-indicative VOCs.

HS-SPME-GC–MS/MS identified 154 VOCs in the flesh of 16 tomato varieties.

Twenty-six characteristic volatiles contributed to various aroma notes.

E-nose and GC–MS/MS combined with LightGBM showed potential to classify fruit colors.

Multivariate data analysis uncovered 16 fruit color-indicative VOCs.

## Full-text entities

- **Chemicals:** hydrocarbons (MESH:D006838), alcohols (MESH:D000438), VOCs (MESH:D055549), aldehydes (MESH:D000447)
- **Species:** Solanum lycopersicum (tomato, species) [taxon 4081]

## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12906072/full.md

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Source: https://tomesphere.com/paper/PMC12906072