# NPM1 phosphorylation-mediated telomere maintenance via stabilization of POLD3 in ALT-positive osteosarcoma: unraveling mechanisms and therapeutic opportunities

**Authors:** Rui Zhao, Tingfang Li, Qiuhui Yang, Duo Jiang, Yanan Xue, Haomeng Kou, Qianqian Wang, Yuwen Wang, Xinyu Han, Wenbin Ma, Guowen Wang, Jinyan Feng, Xiuxin Han, Yancheng Liu, Yaqing Jing, Xin Geng, Fei Wang, Yang Liu, Qiang Zhang, Feng Wang

PMC · DOI: 10.7150/thno.108662 · Theranostics · 2026-01-22

## TL;DR

This study identifies a new mechanism involving NPM1 phosphorylation in maintaining telomeres in osteosarcoma, offering potential new therapies.

## Contribution

The study discovers a novel CST/pT199-NPM1/POLD3 regulatory axis critical for ALT telomere maintenance in osteosarcoma.

## Key findings

- pT199-NPM1 is highly expressed in ALT-positive osteosarcoma tissues and stabilizes POLD3 to maintain telomeres.
- Pharmacological inhibition of NPM1 or its regulators suppresses ALT activity and enhances chemotherapy response in osteosarcoma.
- Elevated Thr199 phosphorylation correlates with poor survival in osteosarcoma patients.

## Abstract

Maintaining telomere integrity is essential for cellular survival, and reactivation of telomerase or alternative lengthening of telomeres (ALT) represents a hallmark of cancer, ensuring replicative immortality. Osteosarcoma (OS), a malignancy in which many tumors rely on ALT for telomere maintenance, lacks effective therapeutic strategies targeting this pathway. This study aimed to identify and characterize novel molecular regulators of ALT activity and explore their potential as therapeutic targets in OS.

Methods: Immunohistochemistry was performed to evaluate the expression of phosphorylated NPM1 (pT199-NPM1) in OS tissues. Functional experiments including NPM1 knockdown and rescue assays were conducted to assess the impact of NPM1 on break-induced telomere replication (BITR) and cell viability in ALT-positive cells. Mechanistic studies involving phosphorylation analysis, ubiquitination assays, and co-immunoprecipitation were used to determine how ATR-mediated phosphorylation of NPM1 regulates POLD3 stability and its interaction with the CST complex. Pharmacological screening was performed to identify compounds that inhibit ALT activity, followed by in vitro proliferation assays and in vivo mouse xenograft experiments to evaluate therapeutic efficacy and synergy with doxorubicin.

Results: We identified pT199-NPM1 as a novel, highly expressed protein factor in ALT-positive OS tissues. NPM1 depletion impaired break-induced telomere replication and significantly reduced the viability of ALT-positive cells. ATR signaling phosphorylated NPM1 at Thr199, which stabilized POLD3 by preventing its ubiquitin-mediated degradation. Recruitment and function of pT199-NPM1 at telomeric damage sites required STN1, defining a CST/pT199-NPM1/POLD3 regulatory axis essential for ALT activity. Clinically, elevated Thr199 phosphorylation correlated with poor survival in OS patients, while expression of a phosphorylation-deficient T199A mutant failed to sustain ALT telomere maintenance. Pharmacological screening identified EPZ-6438, an EZH2 inhibitor, as a potent ALT suppressor that reduced NPM1 transcription, inhibited homologous recombination-mediated telomere synthesis, and suppressed OS cell proliferation. In mouse xenografts, EPZ-6438 enhanced OS cell sensitivity to doxorubicin, suggesting therapeutic synergy.

Conclusions: This study uncovers a novel CST/pT199-NPM1/POLD3 regulatory module that is critical for ALT telomere maintenance in OS. Targeting NPM1 or its downstream effectors effectively suppresses ALT activity and enhances chemotherapy response. These findings provide new mechanistic insights into telomere regulation in ALT-positive tumors and highlight the therapeutic potential of NPM1-centered pathways in OS.

## Linked entities

- **Genes:** NPM1 (nucleophosmin 1) [NCBI Gene 4869], POLD3 (DNA polymerase delta 3, accessory subunit) [NCBI Gene 10714], GAL3ST1 (galactose-3-O-sulfotransferase 1) [NCBI Gene 9514], STN1 (STN1 subunit of CST complex) [NCBI Gene 79991], ATR (ATR checkpoint kinase) [NCBI Gene 545], EZH2 (enhancer of zeste 2 polycomb repressive complex 2 subunit) [NCBI Gene 2146]
- **Proteins:** POLD3 (DNA polymerase delta 3, accessory subunit), GAL3ST1 (galactose-3-O-sulfotransferase 1), STN1 (STN1 subunit of CST complex), ATR (ATR checkpoint kinase), EZH2 (enhancer of zeste 2 polycomb repressive complex 2 subunit)
- **Chemicals:** doxorubicin (PubChem CID 31703), EPZ-6438 (PubChem CID 66558664)
- **Diseases:** osteosarcoma (MONDO:0002623)

## Full-text entities

- **Genes:** Pold3 (polymerase (DNA-directed), delta 3, accessory subunit) [NCBI Gene 67967] {aka 2410142G14Rik, P66, P68}, Npm1 (nucleophosmin 1) [NCBI Gene 18148] {aka B23, NO38, Npm}, Cort (cortistatin) [NCBI Gene 12854] {aka CST, PCST}, Atr (ataxia telangiectasia and Rad3 related) [NCBI Gene 245000], Ezh2 (enhancer of zeste 2 polycomb repressive complex 2 subunit) [NCBI Gene 14056] {aka Enx-1, Enx1h, KMT6, mKIAA4065}
- **Diseases:** OS (MESH:D012516), cancer (MESH:D009369)
- **Chemicals:** EPZ-6438 (MESH:C000593333), doxorubicin (MESH:D004317)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** T199A

## Full text

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## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12905828/full.md

## References

58 references — full list in the complete paper: https://tomesphere.com/paper/PMC12905828/full.md

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Source: https://tomesphere.com/paper/PMC12905828