# Epigenome-wide association study of circulating interleukin-6 connects DNA methylation to immunometabolic and inflammatory health

**Authors:** Lucy Sinke, Jenny van Dongen, Thomas Delerue, Rory Wilson, Yujing Xia, Marian Beekman, Gonneke Willemsen, Christian Gieger, Christian Herder, Wolfgang Koenig, Annette Peters, Eco J. C. de Geus, José M. Ordovas, Jordana T. Bell, Melanie Waldenberger, Dorret I. Boomsma, P. Eline Slagboom, Bastiaan T. Heijmans

PMC · DOI: 10.1038/s42003-026-09520-2 · Communications Biology · 2026-02-04

## TL;DR

This study identifies DNA methylation sites linked to IL-6, a key player in inflammation and metabolism, and reveals how these epigenetic changes may influence disease risk.

## Contribution

The study maps IL-6-associated DNA methylation sites and uncovers causal relationships between methylation and immunometabolic conditions.

## Key findings

- 401 IL-6–associated CpGs were identified, enriched in regulatory regions and linked to genes like AIM2, MTOR, and IL6R.
- Methylation at SOCS3 statistically mediates inflammatory bowel disease risk.
- A CpG linked to NFATC2IP influences IL-6 production and conditions like BMI and type 2 diabetes.

## Abstract

Interleukin-6 (IL-6) drives metabolic and inflammatory processes central to disease. Current knowledge implicates epigenetic mechanisms in the regulation of these pathways, including through the methylation of CpG sites. This blood-based meta-analysis of three cohorts (n = 4,361) identifies 401 IL-6–associated CpGs enriched in regulatory regions and linked to key immunometabolic genes, including AIM2, MTOR, and IL6R. Three complementary causal inference approaches support most sites as responding to IL-6, with SOCS3 (Suppressor of Cytokine Signalling 3) methylation statistically mediating inflammatory bowel disease risk. Notably, one CpG connected to NFATC2IP (Nuclear Factor of Activated T-cells 2 Interacting Protein) plausibly influences both IL-6 production and multiple immunometabolic conditions, including body mass index and type 2 diabetes. Collectively, our results map the DNA methylation landscape surrounding circulating IL-6 levels and unveil directional effects and distinct functional relationships between epigenetics and inflammation.

Meta-analysis and triangulation of causal evidence comprehensively map the DNA methylation landscape surrounding circulating IL-6 levels, with DNA methylation at SOCS3 highlighted as a potential mediator of IL-6 effects on inflammatory disease risk.

## Linked entities

- **Genes:** IL6R (interleukin 6 receptor) [NCBI Gene 3570], AIM2 (absent in melanoma 2) [NCBI Gene 9447], MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475], SOCS3 (suppressor of cytokine signaling 3) [NCBI Gene 9021], NFATC2IP (nuclear factor of activated T cells 2 interacting protein) [NCBI Gene 84901]
- **Proteins:** IL6 (interleukin 6)
- **Diseases:** inflammatory bowel disease (MONDO:0005265), type 2 diabetes (MONDO:0005148)

## Full-text entities

- **Genes:** SOCS3 (suppressor of cytokine signaling 3) [NCBI Gene 9021] {aka ATOD4, CIS3, Cish3, SOCS-3, SSI-3, SSI3}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, AIM2 (absent in melanoma 2) [NCBI Gene 9447] {aka PYHIN4}, NFATC2IP (nuclear factor of activated T cells 2 interacting protein) [NCBI Gene 84901] {aka ESC2, NIP45, RAD60}, IL6R (interleukin 6 receptor) [NCBI Gene 3570] {aka CD126, HIES5, IL-1Ra, IL-6R, IL-6R-1, IL-6RA}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}
- **Diseases:** type 2 diabetes (MESH:D003924), inflammatory bowel disease (MESH:D015212), inflammation (MESH:D007249)

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12905258/full.md

## Figures

10 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12905258/full.md

## References

6 references — full list in the complete paper: https://tomesphere.com/paper/PMC12905258/full.md

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Source: https://tomesphere.com/paper/PMC12905258