# PANoptosis‐Related Diagnostic Biomarkers in Non‐Neovascular Age‐Related Macular Degeneration: An Integrative Transcriptomic and Experimental Study

**Authors:** Jiaming Li, Yirong Ma, Miao Hu, Qian Zhang, Anqi Wang, Qiuyu Tang, Qinshang Guo, Binglin Huang

PMC · DOI: 10.1155/genr/8903808 · Genetics Research · 2026-02-13

## TL;DR

This study identifies four genes linked to PANoptosis, a type of cell death, in non-neovascular age-related macular degeneration, offering potential diagnostic and therapeutic insights.

## Contribution

The study introduces a novel PANoptosis-related gene signature for diagnosing non-neovascular AMD and highlights new therapeutic targets.

## Key findings

- A PANoptosis signature was identified in AMD, especially active in myeloid cells.
- Four genes (PON2, BNIP3, EPHB6, TPD52) distinguished AMD from controls and linked to immune changes.
- TPD52 expression was genetically associated with AMD risk, and gene dysregulation was confirmed in a mouse model.

## Abstract

Age‐related macular degeneration (AMD), particularly its non‐neovascular (dry) form, is a progressive retinal disorder that causes central vision loss and substantial impairment in daily life. Inflammation and immune dysregulation are recognized as core drivers of AMD, yet the contribution of PANoptosis, a form of programmed cell death that integrates pyroptosis, apoptosis, and necroptosis, remains unclear. In this study, we integrated human single‐cell transcriptomic and bulk microarray datasets from the retina and retinal pigment epithelium–choroid to characterize PANoptosis‐related transcriptional changes in dry AMD. Dimensionality reduction, cell‐type annotation, and PANoptosis gene‐set scoring revealed a distinct PANoptosis signature enriched in AMD, with particularly strong activation in myeloid populations. By combining differential expression analysis with machine learning‐based feature selection, we identified four PANoptosis‐related genes (PON2, BNIP3, EPHB6, and TPD52) that robustly distinguished AMD from control samples and were associated with an altered immune microenvironment. Genetic instrument analysis further suggested a positive association between TPD52 expression and AMD risk. At the cellular level, our data highlighted macrophages, especially pro‐inflammatory M1‐like macrophages, as key coordinators of PANoptosis‐related pathways in dry AMD. To validate these findings in vivo, we used a sodium iodate‐induced mouse model of dry AMD and observed significant dysregulation of PON2, BNIP3, EPHB6, and TPD52 in the retina by RT‐qPCR, consistent with the human transcriptomic results and supporting their involvement in retinal degeneration and inflammation. Together, these findings implicate PANoptosis as an important and previously underappreciated component of dry AMD pathophysiology, define a four‐gene PANoptosis‐related signature with diagnostic potential, and suggest new molecular targets for therapeutic intervention.

## Linked entities

- **Genes:** PON2 (paraoxonase 2) [NCBI Gene 5445], BNIP3 (BCL2 interacting protein 3) [NCBI Gene 664], EPHB6 (EPH receptor B6) [NCBI Gene 2051], TPD52 (tumor protein D52) [NCBI Gene 7163]
- **Diseases:** age-related macular degeneration (MONDO:0005150)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** TPD52 (tumor protein D52) [NCBI Gene 7163] {aka D52, N8L, PC-1, PrLZ, hD52}, EPHB6 (EPH receptor B6) [NCBI Gene 2051] {aka HEP}, PON2 (paraoxonase 2) [NCBI Gene 5445], BNIP3 (BCL2 interacting protein 3) [NCBI Gene 664] {aka HABON, NIP3}
- **Diseases:** retinal degeneration (MESH:D012162), AMD (MESH:D008268), retinal disorder (MESH:D012173), vision loss (MESH:D014786), Inflammation (MESH:D007249), immune dysregulation (OMIM:614878)
- **Chemicals:** sodium iodate (MESH:C032285)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]

## Full text

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## Figures

50 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12905011/full.md

## References

41 references — full list in the complete paper: https://tomesphere.com/paper/PMC12905011/full.md

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Source: https://tomesphere.com/paper/PMC12905011