# In-silico target prediction and pathway analysis of propranolol as a potential therapeutic agent for hepatocellular carcinoma

**Authors:** Ishaq Ahmad, Shakeel Ahmad Khan, Muhammad Abu Bakar, Adnan Shakoor, Abdul Wasy Zia

PMC · DOI: 10.1371/journal.pone.0333978 · PLOS One · 2026-02-13

## TL;DR

This study uses computational methods to explore how propranolol, a common drug, might work against liver cancer by targeting key proteins and pathways involved in the disease.

## Contribution

The study identifies specific molecular targets and pathways through which propranolol may inhibit hepatocellular carcinoma.

## Key findings

- Propranolol showed strong binding to key kinases like JAK2, ERBB2, EGFR, and CDK2.
- Molecular simulations confirmed stable interactions and hydrogen bonding with target proteins.
- The drug was found to potentially modulate critical oncogenic pathways such as PI3K–Akt and MAPK.

## Abstract

Hepatocellular carcinoma (HCC) remains lethal despite multitargeted tyrosine kinase inhibitors and immunotherapy, motivating the repurposing of safe, widely available agents. To delineate the anti-HCC potential of propranolol through an in-silico network pharmacology and molecular structure-based study, 70 intersecting potential anti-HCC targets were retrieved from the SwissTargetPrediction and GeneCards databases. Protein–protein interaction (PPI) analysis identified a network of 64 interconnected nodes exhibiting a high average node degree of 9.84, highlighting target centrality. Subsequent hub analysis isolated nine pivotal proteins (SRC, EGFR, CCND1, JAK2, ERBB2, PARP1, CDK4, CDK2, CHEK1) with degree centrality values exceeding 23.2, more than twice the network average. Gene Ontology and KEGG enrichment analyses underscored robust involvement in oncogenic pathways, including PI3K–Akt, MAPK, and immune checkpoints. Molecular docking revealed strong binding affinities of propranolol toward key kinases, notably JAK2 (–8.14 kcalmol-1), ERBB2 (–7.80 kcalmol-1), EGFR (–7.76 kcalmol-1), and CDK2 (–7.44 kcalmol-1). Molecular dynamics simulations confirmed the complex stability, with RMSD values stably maintained below 4.5 Å over 100 ns simulations. The sustained hydrogen-bond occupancy ranged from 30% to 68% per trajectory, corroborating stable ligand engagement. Collectively, these factorial results provide compelling evidence that propranolol may interact with core oncogenic kinase cluster and potential modulation of the critical signaling cascades implicated in HCC pathogenesis. Collectively, these computational findings support the hypothesis that propranolol possesses the molecular characteristics of a viable therapeutic candidate for HCC, thereby substantiating the need for rigorous experimental and translational investigation to validate its clinical potential.

## Linked entities

- **Genes:** SRC (SRC proto-oncogene, non-receptor tyrosine kinase) [NCBI Gene 6714], EGFR (epidermal growth factor receptor) [NCBI Gene 1956], CCND1 (cyclin D1) [NCBI Gene 595], JAK2 (Janus kinase 2) [NCBI Gene 3717], ERBB2 (erb-b2 receptor tyrosine kinase 2) [NCBI Gene 2064], PARP1 (poly(ADP-ribose) polymerase 1) [NCBI Gene 142], CDK4 (cyclin dependent kinase 4) [NCBI Gene 1019], CDK2 (cyclin dependent kinase 2) [NCBI Gene 1017], CHEK1 (checkpoint kinase 1) [NCBI Gene 1111]
- **Proteins:** SRC (SRC proto-oncogene, non-receptor tyrosine kinase), EGFR (epidermal growth factor receptor), JAK2 (Janus kinase 2), ERBB2 (erb-b2 receptor tyrosine kinase 2), PARP1 (poly(ADP-ribose) polymerase 1), CDK4 (cyclin dependent kinase 4), CDK2 (cyclin dependent kinase 2), CHEK1 (checkpoint kinase 1)
- **Chemicals:** propranolol (PubChem CID 4946)
- **Diseases:** hepatocellular carcinoma (MONDO:0007256), HCC (MONDO:0007256)

## Full-text entities

- **Genes:** EGFR (epidermal growth factor receptor) [NCBI Gene 1956] {aka ERBB, ERBB1, ERRP, HER1, NISBD2, NNCIS}, JAK2 (Janus kinase 2) [NCBI Gene 3717] {aka JTK10}, CHEK1 (checkpoint kinase 1) [NCBI Gene 1111] {aka CHK1, OZEMA21}, CDK4 (cyclin dependent kinase 4) [NCBI Gene 1019] {aka CMM3, MCPH31, PSK-J3}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, CDK2 (cyclin dependent kinase 2) [NCBI Gene 1017] {aka CDKN2, p33(CDK2)}, PARP1 (poly(ADP-ribose) polymerase 1) [NCBI Gene 142] {aka ADPRT, ADPRT 1, ADPRT1, ARTD1, PARP, PARP-1}, CCND1 (cyclin D1) [NCBI Gene 595] {aka BCL1, D11S287E, PRAD1, U21B31}, ERBB2 (erb-b2 receptor tyrosine kinase 2) [NCBI Gene 2064] {aka CD340, HER-2, HER-2/neu, HER2, MLN 19, MLN-19}, SRC (SRC proto-oncogene, non-receptor tyrosine kinase) [NCBI Gene 6714] {aka ASV, SRC1, THC6, c-SRC, p60-Src}
- **Diseases:** HCC (MESH:D006528)
- **Chemicals:** hydrogen (MESH:D006859), propranolol (MESH:D011433)

## Full text

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## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12904466/full.md

## References

60 references — full list in the complete paper: https://tomesphere.com/paper/PMC12904466/full.md

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Source: https://tomesphere.com/paper/PMC12904466