# Uridine diphosphate drives myeloid differentiation and functional reprogramming through dynamic transcriptional network

**Authors:** Caterina Giordano, Debora Gentile, Emilio Straface, Raffaella Gallo, Costanza Maria Cristiani, Antonio Abatino, Arianna Pastore, Marilena Celano, Alessandro Arcucci, Francesco Albano, Geppino Falco, Claudia Veneziano, Gianluca Santamaria, Ilenia Aversa, Lisa Isdraele Romano, Camillo Palmieri, Giuseppe Fiume

PMC · DOI: 10.3389/fimmu.2026.1743389 · Frontiers in Immunology · 2026-01-30

## TL;DR

Uridine diphosphate (UDP) suppresses monocyte growth and promotes their transformation into dendritic-like cells with improved phagocytic abilities, suggesting a role in immune regulation.

## Contribution

The study reveals UDP's novel role in modulating human myeloid cell differentiation and function through dynamic transcriptional networks.

## Key findings

- UDP suppresses CD14+ monocyte proliferation and promotes dendritic-like cell differentiation.
- UDP enhances bacterial phagocytosis and efferocytosis in monocytes.
- Transcriptomic analysis identifies gene clusters regulated by NF-κB, RUNX3, BATF, and IRF5 in response to UDP.

## Abstract

Extracellular nucleotides regulate immune responses through purinergic signaling. Uridine diphosphate (UDP), a pyrimidine-derived metabolite, has been shown to accumulate in the tumor microenvironment and modulate T cell activation. However, its effects on human myeloid cells remain poorly understood. Since monocytes represent key precursors for macrophages and dendritic cells, we investigated whether UDP could influence their proliferative and differentiation potential within peripheral blood mononuclear cells (PBMCs).

Freshly isolated PBMCs were stimulated with UDP, and CD14+ cell proliferation was analyzed using CFSE staining and flow cytometry. The impact of UDP on dendritic differentiation was evaluated in PBMC cultures and in purified CD14+ monocytes exposed to IL-4 and GM-CSF, in the presence or absence of UDP. Phagocytic and efferocytic activities were assessed using fluorescently labeled E. coli and apoptotic HeLa cells, respectively. Transcriptomic profiling of PBMCs stimulated with UDP for 2, 6, or 24 hours was performed using the NanoString Human Immunology Panel.

UDP markedly suppressed CD14+ monocyte proliferation and promoted the generation of HLA-DR+CD11c+ dendritic-like cells. In purified monocytes, UDP enhanced IL-4/GM-CSF-driven differentiation into CD14-CD16-HLA-DR+CD11c+ monocyte-derived dendritic cells (moDCs). Functionally, UDP increased both bacterial phagocytosis and efferocytosis. Transcriptomic analysis revealed eight gene clusters with distinct temporal expression patterns, driven by transcription factors such as NF-κB, RUNX3, BATF, and IRF5, indicating coordinated modulation of inflammatory, antigen-presentation, and regulatory pathways.

Our findings identify UDP as a potent immunomodulatory metabolite that restricts monocyte proliferation while promoting differentiation into dendritic-like cells with enhanced phagocytic capacity. UDP engages complex transcriptional programs that integrate innate activation with adaptive immune regulation, highlighting its potential role in immune homeostasis and inflammation control.

## Linked entities

- **Genes:** NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790], RUNX3 (RUNX family transcription factor 3) [NCBI Gene 864], BATF (basic leucine zipper ATF-like transcription factor) [NCBI Gene 10538], IRF5 (interferon regulatory factor 5) [NCBI Gene 3663]
- **Chemicals:** Uridine diphosphate (PubChem CID 6031), IL-4 (PubChem CID 171905173)

## Full-text entities

- **Genes:** CDA (cytidine deaminase) [NCBI Gene 978] {aka CDD}, CCL5 (C-C motif chemokine ligand 5) [NCBI Gene 6352] {aka D17S136E, RANTES, SCYA5, SIS-delta, SISd, TCP228}, LAMP1 (lysosome associated membrane protein 1) [NCBI Gene 3916] {aka CD107a, LAMPA, LGP120}, IRF4 (interferon regulatory factor 4) [NCBI Gene 3662] {aka IMD131, LSIRF, MUM1, NF-EM5, SHEP8}, RUNX2 (RUNX family transcription factor 2) [NCBI Gene 860] {aka AML3, CBF-alpha-1, CBFA1, CCD, CCD1, CLCD}, CCL3 (C-C motif chemokine ligand 3) [NCBI Gene 6348] {aka G0S19-1, LD78, LD78ALPHA, MIP-1-alpha, MIP1A, SCI}, IDO1 (indoleamine 2,3-dioxygenase 1) [NCBI Gene 3620] {aka IDO, IDO-1, INDO}, BATF (basic leucine zipper ATF-like transcription factor) [NCBI Gene 10538] {aka B-ATF, BATF1, SFA-2, SFA2}, CD80 (CD80 molecule) [NCBI Gene 941] {aka B7, B7-1, B7.1, BB1, CD28LG, CD28LG1}, ICAM1 (intercellular adhesion molecule 1) [NCBI Gene 3383] {aka BB2, CD54, P3.58}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, LGALS1 (galectin 1) [NCBI Gene 3956] {aka GAL1, GBP}, FOXP3 (forkhead box P3) [NCBI Gene 50943] {aka AIID, DIETER, IPEX, JM2, PIDX, XPID}, STAT6 (signal transducer and activator of transcription 6) [NCBI Gene 6778] {aka D12S1644, HIES6, IL-4-STAT, STAT6B, STAT6C}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, HAVCR2 (hepatitis A virus cellular receptor 2) [NCBI Gene 84868] {aka CD366, HAVcr-2, KIM-3, SPTCL, TIM3, TIMD-3}, TRIM63 (tripartite motif containing 63) [NCBI Gene 84676] {aka CMH31, IRF, MURF1, MURF2, RNF28, SMRZ}, C1QA (complement C1q A chain) [NCBI Gene 712] {aka C1QD1}, AHR (aryl hydrocarbon receptor) [NCBI Gene 196] {aka FVH3, RP85, bHLHe76}, FLI1 (Fli-1 proto-oncogene, ETS transcription factor) [NCBI Gene 2313] {aka BDPLT21, EWSR2, FLI-1, SIC-1}, APC (APC regulator of Wnt signaling pathway) [NCBI Gene 324] {aka BTPS2, DESMD, DP2, DP2.5, DP3, GS}, NCR1 (natural cytotoxicity triggering receptor 1) [NCBI Gene 9437] {aka CD335, LY94, NK-p46, NKP46}, IRF5 (interferon regulatory factor 5) [NCBI Gene 3663] {aka SLEB10}, HLA-DPA1 (major histocompatibility complex, class II, DP alpha 1) [NCBI Gene 3113] {aka DP(W3), DP(W4), DPA1, HLA-DP1A, HLA-DPA, HLADP}, CXCL1 (C-X-C motif chemokine ligand 1) [NCBI Gene 2919] {aka FSP, GRO1, GROa, MGSA, MGSA-a, NAP-3}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, STAT4 (signal transducer and activator of transcription 4) [NCBI Gene 6775] {aka DPMC, SLEB11}, CCR7 (C-C motif chemokine receptor 7) [NCBI Gene 1236] {aka BLR2, CC-CKR-7, CCR-7, CD197, CDw197, CMKBR7}, ITGAE (integrin subunit alpha E) [NCBI Gene 3682] {aka CD103, HUMINAE}, TLR4 (toll like receptor 4) [NCBI Gene 7099] {aka ARMD10, CD284, TLR-4, TOLL}, IL4 (interleukin 4) [NCBI Gene 3565] {aka BCGF-1, BCGF1, BSF-1, BSF1, IL-4}, TLR7 (toll like receptor 7) [NCBI Gene 51284] {aka IMD74, SLEB17, TLR7-like}, CXCR6 (C-X-C motif chemokine receptor 6) [NCBI Gene 10663] {aka BONZO, CD186, CDw186, STRL33, TYMSTR}, IL21 (interleukin 21) [NCBI Gene 59067] {aka CVID11, IL-21, Za11}, CD40LG (CD40 ligand) [NCBI Gene 959] {aka CD154, CD40L, HIGM1, IGM, IMD3, T-BAM}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, HNF1B (HNF1 homeobox B) [NCBI Gene 6928] {aka ADTKD3, FJHN, HNF-1-beta, HNF-1B, HNF1beta, HNF2}, IL32 (interleukin 32) [NCBI Gene 9235] {aka IL-32alpha, IL-32beta, IL-32delta, IL-32gamma, NK4, TAIF}, GZMB (granzyme B) [NCBI Gene 3002] {aka C11, CCPI, CGL-1, CGL1, CSP-B, CSPB}, CCL4 (C-C motif chemokine ligand 4) [NCBI Gene 6351] {aka ACT2, AT744.1, G-26, HC21, LAG-1, LAG1}, HLA-DPB1 (major histocompatibility complex, class II, DP beta 1) [NCBI Gene 3115] {aka DPB1, HLA-DP, HLA-DP1B, HLA-DPB}, ITGAM (integrin subunit alpha M) [NCBI Gene 3684] {aka CD11B, CR3A, HNA-4, MAC-1, MAC1A, MO1A}, IL2 (interleukin 2) [NCBI Gene 3558] {aka IL-2, TCGF, lymphokine}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, ICOS (inducible T cell costimulator) [NCBI Gene 29851] {aka AILIM, CD278, CVID1}, ITGAX (integrin subunit alpha X) [NCBI Gene 3687] {aka CD11C, SLEB6}, CXCR4 (C-X-C motif chemokine receptor 4) [NCBI Gene 7852] {aka CD184, D2S201E, FB22, HM89, HSY3RR, LCR1}, CD74 (CD74 molecule) [NCBI Gene 972] {aka CLIP, DHLAG, HLADG, II, Ia-GAMMA, p33}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, CSF1R (colony stimulating factor 1 receptor) [NCBI Gene 1436] {aka BANDDOS, C-FMS, CD115, CSF-1R, CSFR, FIM2}, IL17F (interleukin 17F) [NCBI Gene 112744] {aka CANDF6, IL-17F, ML-1, ML1}, ZAP70 (zeta chain of T cell receptor associated protein kinase 70) [NCBI Gene 7535] {aka ADMIO2, IMD48, SRK, STCD, STD, TZK}, RUNX3 (RUNX family transcription factor 3) [NCBI Gene 864] {aka AML2, CBFA3, PEBP2aC}, FCGR3A (Fc gamma receptor IIIa) [NCBI Gene 2214] {aka CD16-II, CD16A, FCG3, FCGR3, FCRIIIA, FcGRIIIA}, IRF7 (interferon regulatory factor 7) [NCBI Gene 3665] {aka IMD39, IRF-7, IRF-7H, IRF7A, IRF7B, IRF7C}, P2RY6 (pyrimidinergic receptor P2Y6) [NCBI Gene 5031] {aka P2Y6}, CSF2 (colony stimulating factor 2) [NCBI Gene 1437] {aka CSF, GMCSF}, CD40 (CD40 molecule) [NCBI Gene 958] {aka Bp50, CDW40, TNFRSF5, p50}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}
- **Diseases:** seizures (MESH:D012640), neuroinflammation (MESH:D000090862), Tumor (MESH:D009369), inflammation (MESH:D007249), melanoma (MESH:D008545), tissue injury (MESH:D017695), necrotic (MESH:D009336), infection (MESH:D007239), CP (MESH:D002972), epileptic (MESH:D004827)
- **Chemicals:** pyrimidine (MESH:C030986), UDP (MESH:D014530), CFSE (MESH:C087165), prostaglandin E2 (MESH:D015232), TRIzol (MESH:C411644), NaN3 (MESH:D019810), Triton X-100 (MESH:D017830), DAPI (MESH:C007293), calcium (MESH:D002118), PBS (MESH:D007854), Tween (MESH:D011136), Cy (MESH:D003545), paraformaldehyde (MESH:C003043), Glutamine (MESH:D005973), CO2 (MESH:D002245), Alexa Fluor  488 (MESH:C000711379), Penicillin (MESH:D010406), HBSS (-)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Escherichia coli (E. coli, species) [taxon 562], Homo sapiens (human, species) [taxon 9606], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395]
- **Cell lines:** HeLa — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_0030), DH5alpha — Drosophila hydei (Fruit fly), Spontaneously immortalized cell line (CVCL_Z531)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12901406/full.md

## References

37 references — full list in the complete paper: https://tomesphere.com/paper/PMC12901406/full.md

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Source: https://tomesphere.com/paper/PMC12901406